Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0024308

Physical Location & Seq

Genomic Coordinates Forward (+)

12268784 .. 12269050

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1154400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGTACTGTGTAGAACTCTTTTGGCTCGATATGGCTAATGACAGACCGAGGAACATCCTCATTAAACGAGCTGCCGGCTTCATTGCTTCCCATGTTGCCAACCGGCTTATGCGATACTATCCTGAGCACAAGATTATTGTCCTTGAAAAGCTTGGTTACAGTTCAAATTTGAAAAACCTTCACCCTTCACATTCATCACCCAACTTTAAGTTTATCAAGGGAGACATCTGCGGTGCTGACTTTTTCAACTTGATCCTTCTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009987 GO:0010253 GO:0010280 GO:0018130 GO:0019438 GO:0030054 GO:0033478 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

89

Amino Acids

10.21

Weight (kDa)

9.03

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024308)

Species	Orthologous Gene IDs
malus_domestica	MD09G1154200.v1.1 MD09G1154400.v1.1
pyrus_communis	pycom09g07330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	231
AclWI	GGATC	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	166
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	4 cut(s)	146, 165, 172, 247
AluBI	AGCT	2 cut(s)	71, 151
AluI	AGCT	2 cut(s)	71, 151
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	173, 189
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	216
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bpu10I	CCTNAGC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	47
Bse118I	RCCGGY	2 cut(s)	74, 102
Bse3DI	GCAATG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	2 cut(s)	75, 103
BsmAI	GTCTC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	115
BspPI	GGATC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	81
BsrFI	RCCGGY	2 cut(s)	74, 102
BssAI	RCCGGY	2 cut(s)	74, 102
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	8, 161
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	255
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	76
Cfr10I	RCCGGY	2 cut(s)	74, 102
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	6 cut(s)	25, 35, 71, 78, 106, 151
CviKI_1	RGCY	6 cut(s)	25, 35, 71, 78, 106, 151
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
FaeI	CATG	1 cut(s)	95
FaiI	YATR	3 cut(s)	32, 93, 110
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	72
HapII	CCGG	2 cut(s)	75, 103
Hin1II	CATG	1 cut(s)	95
HindIII	AAGCTT	1 cut(s)	149
HpaII	CCGG	2 cut(s)	75, 103
HphI	GGTGA	2 cut(s)	173, 189
Hpy188III	TCNNGA	2 cut(s)	122, 260
HpyAV	CCTTC	3 cut(s)	188, 195, 266
HpyCH4III	ACNGT	2 cut(s)	8, 161
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	252
LpnPI	CCDG	3 cut(s)	88, 116, 135
Lsp1109I	GCAGC	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	1 cut(s)	166
MnlI	CCTC	2 cut(s)	42, 68
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	2 cut(s)	63, 207
MspI	CCGG	2 cut(s)	75, 103
NaeI	GCCGGC	1 cut(s)	76
NdeII	GATC	1 cut(s)	252
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	95
PdiI	GCCGGC	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	73
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	63, 207
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	3 cut(s)	73, 153, 180
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	8, 161
TaqI	TCGA	2 cut(s)	27, 261
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	1 cut(s)	166
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	2 cut(s)	63, 207
Tru9I	TTAA	2 cut(s)	63, 207
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	70, 183
XapI	RAATTY	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.