MD09G1160200.v1.1

Lateral organ boundaries (LOB) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0024297
Physical Location & Seq
Forward (+)
12883962 .. 12885052
1091 bp
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UTR
Exon/CDS
Intron
MD09G1160200.v1.1.491

Sequence Viewer

Length: 474 bp
ATGATTTCCAATAATCCAACGAGATGTGCAGCTTGCAGATTTTTGAGAAGAAGATGCCCTCAAGATTGTGTTTTGGCCCCCTATTTTCCCTCCTCCAATCCAGAGAGATTTGCTTGTGTTCATAAGATCTTTGGTGCCGGCAACATTACCAAAATGTTAGAGCAACTTCCAGTCCATTTAAGAGAAGCAGCAGCAGACTCCATGTTTTACGAGGCATCGTTACGCGTTGAAGATCCAGTTTATGGATGTGTTAGAATTATTTCTCAATTGCAACACCATATATTGGAGGCTCAATCCGAGATACTCAAGACAAACGGTCAAATAGCATCCTACATTGCACAACAGCAACTGCACCAGCAGCAGCAAAATGTTGTTCATGGTGCAAGTTACCAGCAAGACATGCAGATCAGTGAATATTCGGGGGTTGGCTGGGACGTGCAAACTTTAGCAAATGACTCTTACTTTCACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

158

Amino Acids

17.82

Weight (kDa)

6.36

Isoelectric Point (pI)

67.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 8 - 104 1.9e-38 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024297)

Species Orthologous Gene IDs
malus_domestica MD09G1160200.v1.1 MD17G1146000.v1.1
prunus_persica Prupe.3G018800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AccB7I CCANNNNNTGG 2 cut(s) 242, 283
AccII CGCG 1 cut(s) 225
AclWI GGATC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 242, 283
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 1 cut(s) 230
AhdI GACNNNNNGTC 1 cut(s) 315
AjiI CACGTC 1 cut(s) 436
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
AlwI GGATC 1 cut(s) 227
AlwNI CAGNNNCTG 1 cut(s) 349
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 5 cut(s) 29, 188, 191, 358, 361
Asp700I GAANNNNTTC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 134
BbvI GCAGC 5 cut(s) 41, 200, 203, 370, 373
BglII AGATCT 1 cut(s) 126
BisI GCNGC 5 cut(s) 30, 189, 192, 359, 362
BlsI GCNGC 5 cut(s) 31, 190, 193, 360, 363
BmeRI GACNNNNNGTC 1 cut(s) 315
BmgBI CACGTC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 2 cut(s) 78, 136
BmsI GCATC 3 cut(s) 44, 224, 335
BpuEI CTTGAG 2 cut(s) 45, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 283
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 170, 236
Bse3DI GCAATG 1 cut(s) 333
BseGI GGATG 2 cut(s) 251, 326
BseLI CCNNNNNNNGG 2 cut(s) 242, 283
BseMI GCAATG 1 cut(s) 333
BseNI ACTGG 2 cut(s) 170, 236
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 5 cut(s) 41, 200, 203, 370, 373
BseYI CCCAGC 1 cut(s) 429
BsgI GTGCAG 2 cut(s) 48, 335
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 77
BshNI GGYRCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 2 cut(s) 242, 283
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 3 cut(s) 126, 232, 405
BspANI GGCC 1 cut(s) 77
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 78, 136
BspPI GGATC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 333
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 2 cut(s) 170, 236
BssAI RCCGGY 1 cut(s) 137
BssMI GATC 3 cut(s) 126, 232, 405
Bst4CI ACNGT 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 400
BstC8I GCNNGC 2 cut(s) 34, 139
BstF5I GGATG 2 cut(s) 251, 326
BstFNI CGCG 1 cut(s) 225
BstKTI GATC 3 cut(s) 129, 235, 408
BstMBI GATC 3 cut(s) 126, 232, 405
BstMWI GCNNNNNNNGC 2 cut(s) 358, 400
BstNSI RCATGY 1 cut(s) 403
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 5 cut(s) 41, 200, 203, 370, 373
BstX2I RGATCY 2 cut(s) 126, 232
BstYI RGATCY 2 cut(s) 126, 232
BsuRI GGCC 1 cut(s) 77
BtrI CACGTC 1 cut(s) 436
BtsCI GGATG 2 cut(s) 251, 326
BtsIMutI CAGTG 1 cut(s) 415
Cac8I GCNNGC 2 cut(s) 34, 139
CaiI CAGNNNCTG 1 cut(s) 349
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 76
CviAII CATG 3 cut(s) 202, 377, 400
CviJI RGCY 4 cut(s) 32, 77, 290, 429
CviKI_1 RGCY 4 cut(s) 32, 77, 290, 429
DpnI GATC 3 cut(s) 128, 234, 407
DpnII GATC 3 cut(s) 126, 232, 405
DriI GACNNNNNGTC 1 cut(s) 315
Eam1105I GACNNNNNGTC 1 cut(s) 315
FaeI CATG 3 cut(s) 205, 380, 403
FaiI YATR 8 cut(s) 123, 203, 243, 279, 281, 378, 401, 472
FaqI GGGAC 1 cut(s) 446
FatI CATG 3 cut(s) 201, 376, 399
Fnu4HI GCNGC 5 cut(s) 30, 189, 192, 359, 362
FokI GGATG 2 cut(s) 258, 313
Fsp4HI GCNGC 5 cut(s) 30, 189, 192, 359, 362
GluI GCNGC 5 cut(s) 30, 189, 192, 359, 362
GsaI CCCAGC 1 cut(s) 433
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 138
Hin1II CATG 3 cut(s) 205, 380, 403
HinfI GANTC 2 cut(s) 197, 455
HpaII CCGG 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 3 cut(s) 62, 101, 307
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 8 cut(s) 29, 36, 271, 338, 352, 383, 403, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 358, 400
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 3 cut(s) 205, 380, 403
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Kzo9I GATC 3 cut(s) 126, 232, 405
LpnPI CCDG 7 cut(s) 114, 151, 183, 249, 368, 404, 415
Lsp1109I GCAGC 5 cut(s) 41, 200, 203, 370, 373
LweI GCATC 3 cut(s) 44, 224, 335
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 2 cut(s) 219, 386
MalI GATC 3 cut(s) 128, 234, 407
MboI GATC 3 cut(s) 126, 232, 405
MboII GAAGA 3 cut(s) 60, 63, 242
MfeI CAATTG 1 cut(s) 266
MflI RGATCY 2 cut(s) 126, 232
MluCI AATT 2 cut(s) 255, 266
MluI ACGCGT 1 cut(s) 223
MlyI GAGTC 2 cut(s) 191, 449
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 5 cut(s) 69, 100, 103, 205, 280
MroNI GCCGGC 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 259
MseI TTAA 1 cut(s) 179
MspI CCGG 1 cut(s) 138
MunI CAATTG 1 cut(s) 266
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 358, 400
NaeI GCCGGC 1 cut(s) 139
NdeII GATC 3 cut(s) 126, 232, 405
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 3 cut(s) 205, 380, 403
NlaIV GGNNCC 2 cut(s) 78, 136
NspI RCATGY 1 cut(s) 403
PdiI GCCGGC 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 259
PflMI CCANNNNNTGG 2 cut(s) 242, 283
PkrI GCNGC 5 cut(s) 31, 190, 193, 360, 363
PleI GAGTC 2 cut(s) 191, 449
PpsI GAGTC 2 cut(s) 191, 449
PspFI CCCAGC 1 cut(s) 429
PspN4I GGNNCC 2 cut(s) 78, 136
PspPI GGNCC 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 349
PsuI RGATCY 2 cut(s) 126, 232
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 5 cut(s) 30, 189, 192, 359, 362
Sau3AI GATC 3 cut(s) 126, 232, 405
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 2 cut(s) 191, 449
SetI ASST 2 cut(s) 34, 438
SfaNI GCATC 3 cut(s) 44, 224, 335
SmlI CTYRAG 2 cut(s) 60, 305
SmoI CTYRAG 2 cut(s) 60, 305
Sse9I AATT 2 cut(s) 255, 266
SspI AATATT 1 cut(s) 416
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 1 cut(s) 438
TasI AATT 2 cut(s) 255, 266
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 1 cut(s) 415
TseI GCWGC 5 cut(s) 29, 188, 191, 358, 361
TspDTI ATGAA 2 cut(s) 110, 365
TspRI CASTG 1 cut(s) 415
Van91I CCANNNNNTGG 2 cut(s) 242, 283
XceI RCATGY 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.