MD09G1216200.v1.1

Cysteine-rich TM module stress tolerance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0024309
Physical Location & Seq
Forward (+)
21394292 .. 21394995
704 bp
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UTR
Exon/CDS
Intron
MD09G1216200.v1.1.491

Sequence Viewer

Length: 336 bp
ATGGACATATTCCATTCTTCTAACTACAAAAATAAATGGAGCAGTGAGAAAACTACATCCAACTGGTTAGAAGTTAGAAGTTGCAAACCTTTATACAAAGCCCTTATATATGCTATTTTCTGGTATCCTTTGAAGTATTTTTCTGCAGCCTCCTATCAGAGAAGAAAAGGCATGGATGCACCACCAAGACAAAGGATGTCGTGCTGCGATCACGTGCAGCGACGCAAGGAGGAGAAAGGCTGCTTCTATGCTTGCTTGTTCACGTTGTGCTGCTGTTGTTGCTGCTACGAGACTTGTGAGTCCTGCTTGAACGGGGTCTGCTGTTGCTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CYSTM

Protein Analysis

112

Amino Acids

13.03

Weight (kDa)

8.65

Isoelectric Point (pI)

67.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 73 - 99 1.4e-06 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024309)

Species Orthologous Gene IDs
malus_domestica MD09G1216200.v1.1
prunus_persica Prupe.3G075000_v2.0.a1
pyrus_communis pycom09g13310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 298
AcvI CACGTG 1 cut(s) 214
AdeI CACNNNGTG 1 cut(s) 267
AgsI TTSAA 2 cut(s) 133, 310
Alw26I GTCTC 1 cut(s) 284
ApeKI GCWGC 7 cut(s) 146, 204, 217, 240, 270, 282, 327
BbrPI CACGTG 1 cut(s) 214
BbvI GCAGC 7 cut(s) 158, 191, 227, 229, 257, 269, 314
BciVI GTATCC 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 144
BfuI GTATCC 1 cut(s) 135
BisI GCNGC 7 cut(s) 147, 205, 218, 241, 271, 283, 328
BlsI GCNGC 7 cut(s) 148, 206, 219, 242, 272, 284, 329
BmsI GCATC 1 cut(s) 166
BsaAI YACGTR 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 68
BseGI GGATG 3 cut(s) 56, 181, 201
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 7 cut(s) 158, 191, 227, 229, 257, 269, 314
BsgI GTGCAG 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 284
Bsp143I GATC 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 148
BsrI ACTGG 1 cut(s) 68
BssMI GATC 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 333
BstF5I GGATG 3 cut(s) 56, 181, 201
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 2 cut(s) 279, 327
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 7 cut(s) 158, 191, 227, 229, 257, 269, 314
BsuI GTATCC 1 cut(s) 135
BtsCI GGATG 3 cut(s) 56, 181, 201
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 253
CseI GACGC 1 cut(s) 231
CviAII CATG 1 cut(s) 172
CviJI RGCY 3 cut(s) 101, 149, 240
CviKI_1 RGCY 3 cut(s) 101, 149, 240
DdeI CTNAG 1 cut(s) 333
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DraIII CACNNNGTG 1 cut(s) 267
DrdI GACNNNNNNGTC 1 cut(s) 298
DseDI GACNNNNNNGTC 1 cut(s) 298
Eco72I CACGTG 1 cut(s) 214
FaeI CATG 1 cut(s) 175
FaiI YATR 7 cut(s) 8, 94, 107, 109, 111, 173, 249
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 7 cut(s) 147, 205, 218, 241, 271, 283, 328
FokI GGATG 3 cut(s) 43, 188, 208
Fsp4HI GCNGC 7 cut(s) 147, 205, 218, 241, 271, 283, 328
GluI GCNGC 7 cut(s) 147, 205, 218, 241, 271, 283, 328
HgaI GACGC 1 cut(s) 231
Hin1II CATG 1 cut(s) 175
HinfI GANTC 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 261
Hpy99I CGWCG 1 cut(s) 225
HpyCH4IV ACGT 2 cut(s) 213, 263
HpyCH4V TGCA 4 cut(s) 84, 146, 179, 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 279, 327
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 2 cut(s) 213, 263
Hsp92II CATG 1 cut(s) 175
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 3 cut(s) 49, 106, 316
Lsp1109I GCAGC 7 cut(s) 158, 191, 227, 229, 257, 269, 314
LweI GCATC 1 cut(s) 166
MaeII ACGT 2 cut(s) 213, 263
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 2 cut(s) 9, 174
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 2 cut(s) 160, 223
MwoI GCNNNNNNNGC 2 cut(s) 279, 327
NdeII GATC 1 cut(s) 208
NlaIII CATG 1 cut(s) 175
PkrI GCNGC 7 cut(s) 148, 206, 219, 242, 272, 284, 329
PleI GAGTC 1 cut(s) 307
PmaCI CACGTG 1 cut(s) 214
PmlI CACGTG 1 cut(s) 214
PpsI GAGTC 1 cut(s) 307
Ppu21I YACGTR 1 cut(s) 214
PspCI CACGTG 1 cut(s) 214
PstI CTGCAG 1 cut(s) 148
SatI GCNGC 7 cut(s) 147, 205, 218, 241, 271, 283, 328
Sau3AI GATC 1 cut(s) 208
SchI GAGTC 1 cut(s) 308
SetI ASST 3 cut(s) 91, 216, 266
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 144
TaiI ACGT 2 cut(s) 216, 266
TscAI CASTG 1 cut(s) 49
TseI GCWGC 7 cut(s) 146, 204, 217, 240, 270, 282, 327
TspRI CASTG 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.