MD09G1241600.v1.1

Transcription factor VOZ1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0028446
Physical Location & Seq
Reverse (-)
30886592 .. 30888226
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1241600.v1.1.491

Sequence Viewer

Length: 783 bp
ATGCCGAAGGACTCCAAGGGCAAGTGTGACGCTGCTTCTCACAAGTTACTGAAGGAAAAAACAAAGAGTCGAGTCCACGAGCTTCAAGGGATGGTCACCAATATTCAAATTGCCAGGAAAGAGGGTCGAACTGCCGACATTTCCATCTGGGAGGAACAAAAGCATCGGATGCTTGGCGGGTGGGATGCCAAGCTCAATGACCCCTCCCGGCATCTTCTCTACGTGACCTTTTCGTTTCTTAATTTTAAGGAACCTCGAGAAGATATTATTCAAGGATTGGACTTTGACCAATGCCACACTGCGTCCAGTTTCCAGAATACAGTGGTTCATAGCTCAGATTTGGCAACTCAAATAAATGATAATCACTTTGAATTTCCTAATTACTTAAATGAAGGGCTTTTCATCAGTCGCAATGACATTAAACAATCTGAAGAGGATGTTGTGCCAAATGTTCTGCCGGATATATGTCCTCCAGAATCTGCTTTCTTAGGGCCAAAATGTGCTCTTTGGGATCGTTCCAGGCCTGCTCAAGTTTCGTGTCAGGATTATTGCAGTGGTTGTCATGCTCTTTTAGCAAGAAATGAAGGTTTTCCTGGGAACACTCCAATTTTGCGACCTCACTTTCTTTCCTCAAGGGTGAAACGCTTAGGGAGTGGCTCTTTTTTGGTAAGCCTAGAAGGGCCTTTGAGAGTGGAAACAGGACTGCCAGACTACAGTGGGCGCGGTTGGCATAGATCAAGAAAGCAGGTGATGAAGGAATTTGGGGGACAGAAAAAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

29.37

Weight (kDa)

8.43

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028446)

Species Orthologous Gene IDs
malus_domestica MD09G1241600.v1.1
pyrus_communis pycom09g16020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 736
Acc36I ACCTGC 1 cut(s) 736
AccII CGCG 1 cut(s) 723
AciI CCGC 2 cut(s) 177, 723
AclWI GGATC 1 cut(s) 519
AcsI RAATTY 2 cut(s) 371, 758
AcuI CTGAAG 2 cut(s) 71, 450
AgsI TTSAA 4 cut(s) 86, 107, 272, 371
AjnI CCWGG 3 cut(s) 113, 518, 592
AluBI AGCT 3 cut(s) 82, 193, 333
AluI AGCT 3 cut(s) 82, 193, 333
Alw21I GWGCWC 1 cut(s) 505
AlwI GGATC 1 cut(s) 519
AlwNI CAGNNNCTG 1 cut(s) 479
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 3 cut(s) 491, 521, 680
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 2 cut(s) 371, 758
Asp700I GAANNNNTTC 1 cut(s) 588
AspLEI GCGC 1 cut(s) 723
AspS9I GGNCC 2 cut(s) 491, 680
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 3 cut(s) 88, 649, 760
AvaI CYCGRG 1 cut(s) 255
BauI CACGAG 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 1 cut(s) 19
BccI CCATC 2 cut(s) 85, 152
BciT130I CCWGG 3 cut(s) 115, 520, 594
BcnI CCSGG 1 cut(s) 208
BfaI CTAG 2 cut(s) 674, 781
BfmI CTRYAG 1 cut(s) 712
BfuAI ACCTGC 1 cut(s) 736
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 4 cut(s) 115, 208, 520, 594
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 491, 680
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 4 cut(s) 115, 208, 520, 594
BmsI GCATC 4 cut(s) 159, 172, 175, 220
BpmI CTGGAG 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 646
BpuEI CTTGAG 2 cut(s) 513, 616
BpuMI CCSGG 1 cut(s) 208
BsaAI YACGTR 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 15, 593
Bse1I ACTGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 418
BseBI CCWGG 3 cut(s) 115, 520, 594
BseDI CCNNGG 2 cut(s) 15, 593
BseGI GGATG 4 cut(s) 96, 174, 190, 442
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 306
BseXI GCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 723
BshFI GGCC 3 cut(s) 493, 523, 682
BsiHKAI GWGCWC 1 cut(s) 505
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 208, 458
BsnI GGCC 3 cut(s) 493, 523, 682
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 2 cut(s) 511, 734
BspACI CCGC 2 cut(s) 177, 723
BspANI GGCC 3 cut(s) 493, 523, 682
BspCNI CTCAG 1 cut(s) 347
BspFNI CGCG 1 cut(s) 723
BspLI GGNNCC 1 cut(s) 252
BspMI ACCTGC 1 cut(s) 736
BspPI GGATC 1 cut(s) 519
BsrDI GCAATG 1 cut(s) 418
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 2 cut(s) 15, 593
BssMI GATC 2 cut(s) 511, 734
BssSI CACGAG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 77
Bst2UI CCWGG 3 cut(s) 115, 520, 594
Bst4CI ACNGT 2 cut(s) 322, 716
Bst6I CTCTTC 1 cut(s) 426
BstAPI GCANNNNNTGC 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 525
BstDEI CTNAG 3 cut(s) 334, 487, 646
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 4 cut(s) 96, 174, 190, 442
BstFNI CGCG 1 cut(s) 723
BstHHI GCGC 1 cut(s) 723
BstKTI GATC 2 cut(s) 514, 737
BstMBI GATC 2 cut(s) 511, 734
BstMWI GCNNNNNNNGC 3 cut(s) 169, 572, 727
BstNI CCWGG 3 cut(s) 115, 520, 594
BstPI GGTNACC 1 cut(s) 94
BstSCI CCNGG 4 cut(s) 113, 206, 518, 592
BstSFI CTRYAG 1 cut(s) 712
BstUI CGCG 1 cut(s) 723
BstV1I GCAGC 1 cut(s) 19
BsuRI GGCC 3 cut(s) 493, 523, 682
BtsCI GGATG 4 cut(s) 96, 174, 190, 442
BtsI GCAGTG 2 cut(s) 297, 559
BtsIMutI CAGTG 4 cut(s) 297, 327, 559, 721
BveI ACCTGC 1 cut(s) 736
Cac8I GCNNGC 1 cut(s) 525
CaiI CAGNNNCTG 1 cut(s) 479
CfoI GCGC 1 cut(s) 723
Cfr13I GGNCC 2 cut(s) 491, 680
CseI GACGC 2 cut(s) 38, 291
CviAII CATG 1 cut(s) 563
CviJI RGCY 9 cut(s) 82, 193, 333, 397, 493, 523, 657, 672, 682
CviKI_1 RGCY 9 cut(s) 82, 193, 333, 397, 493, 523, 657, 672, 682
DdeI CTNAG 3 cut(s) 334, 487, 646
DpnI GATC 2 cut(s) 513, 736
DpnII GATC 2 cut(s) 511, 734
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 15
Eco147I AGGCCT 1 cut(s) 523
Eco57I CTGAAG 2 cut(s) 71, 450
Eco88I CYCGRG 1 cut(s) 255
Eco91I GGTNACC 1 cut(s) 94
EcoO109I RGGNCCY 1 cut(s) 680
EcoO65I GGTNACC 1 cut(s) 94
EcoRII CCWGG 3 cut(s) 113, 518, 592
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 1 cut(s) 566
FaiI YATR 5 cut(s) 330, 464, 466, 564, 732
FatI CATG 1 cut(s) 562
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 4 cut(s) 103, 181, 197, 449
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 2 cut(s) 674, 781
GlaI GCGC 1 cut(s) 722
GluI GCNGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 3 cut(s) 493, 523, 682
HapII CCGG 2 cut(s) 208, 458
HgaI GACGC 2 cut(s) 38, 291
HhaI GCGC 1 cut(s) 723
Hin1II CATG 1 cut(s) 566
Hin6I GCGC 1 cut(s) 721
HinP1I GCGC 1 cut(s) 721
HinfI GANTC 4 cut(s) 11, 67, 72, 476
HpaII CCGG 2 cut(s) 208, 458
HphI GGTGA 3 cut(s) 88, 649, 760
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 3 cut(s) 168, 337, 430
Hpy188III TCNNGA 5 cut(s) 257, 313, 473, 542, 738
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 5 cut(s) 46, 386, 578, 671, 748
HpyCH4III ACNGT 2 cut(s) 322, 716
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 1 cut(s) 552
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 572, 727
HpyF3I CTNAG 3 cut(s) 334, 487, 646
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 1 cut(s) 566
HspAI GCGC 1 cut(s) 721
Kzo9I GATC 2 cut(s) 511, 734
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 4 cut(s) 159, 172, 175, 220
MaeI CTAG 2 cut(s) 674, 781
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 4 cut(s) 26, 45, 94, 223
MalI GATC 2 cut(s) 513, 736
MboI GATC 2 cut(s) 511, 734
MboII GAAGA 3 cut(s) 206, 272, 443
MhlI GDGCHC 1 cut(s) 505
MluCI AATT 6 cut(s) 108, 241, 371, 379, 606, 758
MlyI GAGTC 3 cut(s) 5, 76, 81
MnlI CCTC 8 cut(s) 115, 145, 214, 264, 427, 480, 627, 640
MroXI GAANNNNTTC 1 cut(s) 588
MseI TTAA 4 cut(s) 240, 246, 386, 420
MspI CCGG 2 cut(s) 208, 458
MspR9I CCNGG 4 cut(s) 115, 208, 520, 594
MvaI CCWGG 3 cut(s) 115, 520, 594
MvnI CGCG 1 cut(s) 723
MwoI GCNNNNNNNGC 3 cut(s) 169, 572, 727
NciI CCSGG 1 cut(s) 208
NdeII GATC 2 cut(s) 511, 734
NlaIII CATG 1 cut(s) 566
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 3 cut(s) 26, 94, 223
PaeR7I CTCGAG 1 cut(s) 255
PaqCI CACCTGC 1 cut(s) 736
PceI AGGCCT 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 1 cut(s) 476
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 3 cut(s) 5, 75, 80
PpsI GAGTC 3 cut(s) 5, 75, 80
Ppu21I YACGTR 1 cut(s) 223
Psp6I CCWGG 3 cut(s) 113, 518, 592
PspEI GGTNACC 1 cut(s) 94
PspGI CCWGG 3 cut(s) 113, 518, 592
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 2 cut(s) 491, 680
PstNI CAGNNNCTG 1 cut(s) 479
SaqAI TTAA 4 cut(s) 240, 246, 386, 420
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 511, 734
Sau96I GGNCC 2 cut(s) 491, 680
SchI GAGTC 3 cut(s) 5, 76, 81
ScrFI CCNGG 4 cut(s) 115, 208, 520, 594
SduI GDGCHC 1 cut(s) 505
SetI ASST 9 cut(s) 84, 195, 225, 230, 256, 335, 589, 619, 750
SfaNI GCATC 4 cut(s) 159, 172, 175, 220
SfcI CTRYAG 1 cut(s) 712
Sfr274I CTCGAG 1 cut(s) 255
SlaI CTCGAG 1 cut(s) 255
SmlI CTYRAG 3 cut(s) 255, 528, 631
SmoI CTYRAG 3 cut(s) 255, 528, 631
Sse9I AATT 6 cut(s) 108, 241, 371, 379, 606, 758
SseBI AGGCCT 1 cut(s) 523
SsiI CCGC 2 cut(s) 177, 723
SspI AATATT 1 cut(s) 103
SspMI CTAG 2 cut(s) 674, 781
StuI AGGCCT 1 cut(s) 523
StyD4I CCNGG 4 cut(s) 113, 206, 518, 592
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 2 cut(s) 322, 716
TaiI ACGT 1 cut(s) 225
TaqI TCGA 3 cut(s) 70, 127, 256
TasI AATT 6 cut(s) 108, 241, 371, 379, 606, 758
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 4 cut(s) 240, 246, 386, 420
Tru9I TTAA 4 cut(s) 240, 246, 386, 420
TscAI CASTG 4 cut(s) 304, 327, 559, 721
TseFI GTSAC 3 cut(s) 26, 94, 223
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 3 cut(s) 26, 94, 223
TspDTI ATGAA 5 cut(s) 317, 391, 405, 597, 767
TspRI CASTG 4 cut(s) 304, 327, 559, 721
XapI RAATTY 2 cut(s) 371, 758
XhoI CTCGAG 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 2 cut(s) 674, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.