pycom09g16020

Transcription factor VOZ1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0028446
Physical Location & Seq
Reverse (-)
16121453 .. 16123271
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g16020.5

Sequence Viewer

Length: 747 bp
ATGCCGAAGGACTCCAAGGGCAAGTGTGACGCTGCTTCTCGCAAGTTACTGACGAAAACAACAAAGACTCGAGTCCACGAGCTTAAAGGGATGGTCACCAATATTCAAATGGCCAGGAAAGAGGGTCGAACTGCCGACATTTCCACCTGGGAGGAACAAATGTATCGGATGCTTGGCGGCTTCATGCTTAATCAACTTTTCAGGACCTTTTCGTTTCTTAATTTTAAGGAACCTCGAGAAGATATTTTTCAAGGATTGGACCTTGACCAATATTCGGCTACTCAAATAAATGATAATCATTTTGAATTTCCTAATTACTTAAATGAAGGGCCTTTCATCAGTCGCAATGACATTAAACAATCTGAAGAGGATGTTGTGCCACATGTTCTGCCGGATATATGTCCTCCAGAATCTGCTTTCTTAGGGCCAAAATGTGCTCTTTGGGATTGTTCCAGGCCTGCTCAAGTTTTGTGTCAGGATTATTGCAGTGGTTGTCATGAGTGGCTCTTTTTTCGTAGGCCTAGAAGGGCCTTTGAGAGTGGAAACAGGAAGCAGAGATCACTGCTAGACTACAGCGGGCGCGGTTGGCATGAATCAAGAAACGATTACGAGTGGCATTTGTTTGAGTATGAAGCCAACAAGTCAGACGCCTGTGCACTATATAAGTTGGAGCTCAAGTTTGGCACGGCAAAGAAAAGTTCCAAAGGATCTGACCTCCAGAAGAAGATGGGAAGGGTCACTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.84

Weight (kDa)

8.55

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028446)

Species Orthologous Gene IDs
malus_domestica MD09G1241600.v1.1
pyrus_communis pycom09g16020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 582
AciI CCGC 3 cut(s) 177, 576, 582
AclWI GGATC 1 cut(s) 715
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 384
AcyI GRCGYC 1 cut(s) 648
AfiI CCNNNNNNNGG 1 cut(s) 274
AflIII ACRYGT 1 cut(s) 382
AgsI TTSAA 3 cut(s) 107, 251, 305
AjnI CCWGG 3 cut(s) 113, 146, 452
AluBI AGCT 2 cut(s) 82, 673
AluI AGCT 2 cut(s) 82, 673
Alw21I GWGCWC 3 cut(s) 439, 658, 675
Alw44I GTGCAC 1 cut(s) 654
AlwI GGATC 1 cut(s) 715
AlwNI CAGNNNCTG 1 cut(s) 413
Ama87I CYCGRG 2 cut(s) 69, 234
AoxI GGCC 6 cut(s) 111, 329, 425, 455, 518, 528
ApaLI GTGCAC 1 cut(s) 654
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 305
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 5 cut(s) 204, 259, 329, 425, 528
AsuHPI GGTGA 1 cut(s) 88
AvaI CYCGRG 2 cut(s) 69, 234
AvaII GGWCC 2 cut(s) 204, 259
BaeGI GKGCMC 1 cut(s) 658
BaeI ACNNNNGTAYC 2 cut(s) 146, 179
BalI TGGCCA 1 cut(s) 113
BanII GRGCYC 1 cut(s) 675
BarI GAAGNNNNNNTAC 1 cut(s) 724
BauI CACGAG 1 cut(s) 77
Bbv12I GWGCWC 3 cut(s) 439, 658, 675
BbvI GCAGC 1 cut(s) 19
BccI CCATC 2 cut(s) 85, 721
BceAI ACGGC 1 cut(s) 702
BciT130I CCWGG 3 cut(s) 115, 148, 454
BfaI CTAG 2 cut(s) 522, 566
BfmI CTRYAG 1 cut(s) 571
BisI GCNGC 2 cut(s) 33, 178
BlsI GCNGC 2 cut(s) 34, 179
Bme1390I CCNGG 3 cut(s) 115, 148, 454
Bme18I GGWCC 2 cut(s) 204, 259
BmeT110I CYCGRG 2 cut(s) 69, 234
BmgT120I GGNCC 5 cut(s) 204, 259, 329, 425, 528
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 3 cut(s) 115, 148, 454
BmsI GCATC 1 cut(s) 159
BoxI GACNNNNGTC 1 cut(s) 71
BpmI CTGGAG 2 cut(s) 390, 701
BpuEI CTTGAG 2 cut(s) 447, 659
BsaHI GRCGYC 1 cut(s) 648
BsaJI CCNNGG 2 cut(s) 15, 147
BsaXI ACNNNNNCTCC 2 cut(s) 662, 692
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 352
BseBI CCWGG 3 cut(s) 115, 148, 454
BseDI CCNNGG 2 cut(s) 15, 147
BseGI GGATG 3 cut(s) 96, 174, 376
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMI GCAATG 1 cut(s) 352
BseSI GKGCMC 1 cut(s) 658
BseXI GCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 582
BshFI GGCC 6 cut(s) 113, 331, 427, 457, 520, 530
BsiHKAI GWGCWC 3 cut(s) 439, 658, 675
BsiHKCI CYCGRG 2 cut(s) 69, 234
BsiSI CCGG 1 cut(s) 392
BslI CCNNNNNNNGG 1 cut(s) 274
BsnI GGCC 6 cut(s) 113, 331, 427, 457, 520, 530
BsoBI CYCGRG 2 cut(s) 69, 234
Bsp1286I GDGCHC 3 cut(s) 439, 658, 675
Bsp143I GATC 2 cut(s) 557, 707
BspACI CCGC 3 cut(s) 177, 576, 582
BspANI GGCC 6 cut(s) 113, 331, 427, 457, 520, 530
BspFNI CGCG 1 cut(s) 582
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 715
BsrDI GCAATG 1 cut(s) 352
BssECI CCNNGG 2 cut(s) 15, 147
BssMI GATC 2 cut(s) 557, 707
BssNI GRCGYC 1 cut(s) 648
BssSI CACGAG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 77
Bst2UI CCWGG 3 cut(s) 115, 148, 454
Bst6I CTCTTC 1 cut(s) 360
BstACI GRCGYC 1 cut(s) 648
BstC8I GCNNGC 2 cut(s) 459, 578
BstDEI CTNAG 2 cut(s) 421, 744
BstEII GGTNACC 1 cut(s) 94
BstF5I GGATG 3 cut(s) 96, 174, 376
BstFNI CGCG 1 cut(s) 582
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 2 cut(s) 560, 710
BstMBI GATC 2 cut(s) 557, 707
BstMWI GCNNNNNNNGC 1 cut(s) 586
BstNI CCWGG 3 cut(s) 115, 148, 454
BstNSI RCATGY 1 cut(s) 386
BstPAI GACNNNNGTC 1 cut(s) 71
BstPI GGTNACC 1 cut(s) 94
BstSCI CCNGG 3 cut(s) 113, 146, 452
BstSFI CTRYAG 1 cut(s) 571
BstSLI GKGCMC 1 cut(s) 658
BstUI CGCG 1 cut(s) 582
BstV1I GCAGC 1 cut(s) 19
BstX2I RGATCY 1 cut(s) 707
BstYI RGATCY 1 cut(s) 707
BsuRI GGCC 6 cut(s) 113, 331, 427, 457, 520, 530
BtsCI GGATG 3 cut(s) 96, 174, 376
BtsI GCAGTG 2 cut(s) 493, 560
BtsIMutI CAGTG 2 cut(s) 493, 560
Cac8I GCNNGC 2 cut(s) 459, 578
CaiI CAGNNNCTG 1 cut(s) 413
CciI TCATGA 1 cut(s) 496
CfoI GCGC 1 cut(s) 582
Cfr13I GGNCC 5 cut(s) 204, 259, 329, 425, 528
CseI GACGC 2 cut(s) 38, 656
CviAII CATG 4 cut(s) 184, 383, 497, 590
DdeI CTNAG 2 cut(s) 421, 744
DpnI GATC 2 cut(s) 559, 709
DpnII GATC 2 cut(s) 557, 707
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Ecl136II GAGCTC 1 cut(s) 673
Eco130I CCWWGG 1 cut(s) 15
Eco147I AGGCCT 2 cut(s) 457, 520
Eco24I GRGCYC 1 cut(s) 675
Eco47I GGWCC 2 cut(s) 204, 259
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 384
Eco88I CYCGRG 2 cut(s) 69, 234
Eco91I GGTNACC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 673
EcoO109I RGGNCCY 3 cut(s) 204, 329, 528
EcoO65I GGTNACC 1 cut(s) 94
EcoRII CCWGG 3 cut(s) 113, 146, 452
EcoT14I CCWWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 675
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 4 cut(s) 187, 386, 500, 593
FaiI YATR 9 cut(s) 185, 384, 398, 400, 498, 591, 630, 661, 663
FatI CATG 4 cut(s) 183, 382, 496, 589
FauI CCCGC 1 cut(s) 569
Fnu4HI GCNGC 2 cut(s) 33, 178
FokI GGATG 3 cut(s) 103, 181, 383
FriOI GRGCYC 1 cut(s) 675
Fsp4HI GCNGC 2 cut(s) 33, 178
FspBI CTAG 2 cut(s) 522, 566
GlaI GCGC 1 cut(s) 581
GluI GCNGC 2 cut(s) 33, 178
GsuI CTGGAG 2 cut(s) 390, 701
HaeIII GGCC 6 cut(s) 113, 331, 427, 457, 520, 530
HapII CCGG 1 cut(s) 392
HgaI GACGC 2 cut(s) 38, 656
HhaI GCGC 1 cut(s) 582
Hin1I GRCGYC 1 cut(s) 648
Hin1II CATG 4 cut(s) 187, 386, 500, 593
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HinfI GANTC 5 cut(s) 11, 67, 72, 410, 593
HpaII CCGG 1 cut(s) 392
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 76, 656
Hpy188I TCNGA 4 cut(s) 168, 364, 646, 712
Hpy188III TCNNGA 7 cut(s) 202, 236, 407, 476, 497, 597, 718
Hpy8I GTNNAC 2 cut(s) 76, 656
HpyAV CCTTC 3 cut(s) 320, 519, 726
HpyCH4V TGCA 2 cut(s) 486, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 586
HpyF3I CTNAG 2 cut(s) 421, 744
Hsp92I GRCGYC 1 cut(s) 648
Hsp92II CATG 4 cut(s) 187, 386, 500, 593
HspAI GCGC 1 cut(s) 580
Kzo9I GATC 2 cut(s) 557, 707
LmnI GCTCC 1 cut(s) 670
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 1 cut(s) 159
MaeI CTAG 2 cut(s) 522, 566
MaeIII GTNAC 4 cut(s) 26, 45, 94, 736
MalI GATC 2 cut(s) 559, 709
MboI GATC 2 cut(s) 557, 707
MboII GAAGA 4 cut(s) 251, 377, 733, 736
MflI RGATCY 1 cut(s) 707
MhlI GDGCHC 3 cut(s) 439, 658, 675
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 3 cut(s) 220, 305, 313
MluNI TGGCCA 1 cut(s) 113
MlyI GAGTC 3 cut(s) 5, 61, 81
MmeI TCCRAC 1 cut(s) 648
MnlI CCTC 6 cut(s) 115, 145, 243, 361, 414, 725
Mox20I TGGCCA 1 cut(s) 113
MscI TGGCCA 1 cut(s) 113
MseI TTAA 6 cut(s) 84, 189, 219, 225, 320, 354
Msp20I TGGCCA 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 576
MspI CCGG 1 cut(s) 392
MspR9I CCNGG 3 cut(s) 115, 148, 454
MvaI CCWGG 3 cut(s) 115, 148, 454
MvnI CGCG 1 cut(s) 582
MwoI GCNNNNNNNGC 1 cut(s) 586
NdeII GATC 2 cut(s) 557, 707
NlaIII CATG 4 cut(s) 187, 386, 500, 593
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 3 cut(s) 26, 94, 736
NspI RCATGY 1 cut(s) 386
PaeR7I CTCGAG 2 cut(s) 69, 234
PagI TCATGA 1 cut(s) 496
PceI AGGCCT 2 cut(s) 457, 520
PciI ACATGT 1 cut(s) 382
PfeI GAWTC 2 cut(s) 410, 593
PkrI GCNGC 2 cut(s) 34, 179
PleI GAGTC 3 cut(s) 5, 61, 80
PpsI GAGTC 3 cut(s) 5, 61, 80
PpuMI RGGWCCY 1 cut(s) 204
PscI ACATGT 1 cut(s) 382
PshAI GACNNNNGTC 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 675
Psp5II RGGWCCY 1 cut(s) 204
Psp6I CCWGG 3 cut(s) 113, 146, 452
PspEI GGTNACC 1 cut(s) 94
PspGI CCWGG 3 cut(s) 113, 146, 452
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 5 cut(s) 204, 259, 329, 425, 528
PspPPI RGGWCCY 1 cut(s) 204
PspXI VCTCGAGB 1 cut(s) 69
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 1 cut(s) 707
SacI GAGCTC 1 cut(s) 675
SaqAI TTAA 6 cut(s) 84, 189, 219, 225, 320, 354
SatI GCNGC 2 cut(s) 33, 178
Sau3AI GATC 2 cut(s) 557, 707
Sau96I GGNCC 5 cut(s) 204, 259, 329, 425, 528
SchI GAGTC 3 cut(s) 5, 61, 81
ScrFI CCNGG 3 cut(s) 115, 148, 454
SduI GDGCHC 3 cut(s) 439, 658, 675
SetI ASST 7 cut(s) 84, 149, 209, 235, 264, 675, 717
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 1 cut(s) 571
Sfr274I CTCGAG 2 cut(s) 69, 234
SinI GGWCC 2 cut(s) 204, 259
SlaI CTCGAG 2 cut(s) 69, 234
SmlI CTYRAG 4 cut(s) 69, 234, 462, 674
SmoI CTYRAG 4 cut(s) 69, 234, 462, 674
Sse9I AATT 3 cut(s) 220, 305, 313
SseBI AGGCCT 2 cut(s) 457, 520
SsiI CCGC 3 cut(s) 177, 576, 582
SspI AATATT 2 cut(s) 103, 272
SspMI CTAG 2 cut(s) 522, 566
SstI GAGCTC 1 cut(s) 675
StuI AGGCCT 2 cut(s) 457, 520
StyD4I CCNGG 3 cut(s) 113, 146, 452
StyI CCWWGG 1 cut(s) 15
TaqI TCGA 3 cut(s) 70, 127, 235
TasI AATT 3 cut(s) 220, 305, 313
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 2 cut(s) 410, 593
Tru1I TTAA 6 cut(s) 84, 189, 219, 225, 320, 354
Tru9I TTAA 6 cut(s) 84, 189, 219, 225, 320, 354
TscAI CASTG 2 cut(s) 493, 567
TseFI GTSAC 3 cut(s) 26, 94, 736
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 3 cut(s) 26, 94, 736
TspDTI ATGAA 5 cut(s) 172, 325, 339, 606, 645
TspRI CASTG 2 cut(s) 493, 567
VneI GTGCAC 1 cut(s) 654
VpaK11BI GGWCC 2 cut(s) 204, 259
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XhoI CTCGAG 2 cut(s) 69, 234
XspI CTAG 2 cut(s) 522, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.