MD09G1242400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0024321
Physical Location & Seq
Reverse (-)
30961085 .. 30962759
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1242400.v1.1.491

Sequence Viewer

Length: 216 bp
ATGCGAAACGGGGAACGGGCGGCTTTGGCTTCGGGGGCGAGACGCGCAGCACAGACAGAGCTGCGGCCGGCGCAGGAGCGGAAAATGGATCTGGCGGCTGCTGAGGTGGCCATTGATTCTTACTATTTCTCAGAGGAGGAGGATTTAGGGTTTTGGATGCTTGCCACTCACACTCGGGACGTGTTTGAGAGTTCGGTCTTTTTCATTTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.09

Weight (kDa)

4.81

Isoelectric Point (pI)

61.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024321)

Species Orthologous Gene IDs
malus_domestica MD09G1242400.v1.1
rosa_laevigata RLG00000001966
rosa_samantha Rh4AG351500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 79
AccII CGCG 1 cut(s) 45
AciI CCGC 4 cut(s) 20, 64, 79, 95
AclWI GGATC 1 cut(s) 96
AcoI YGGCCR 2 cut(s) 65, 108
AflIII ACRYGT 1 cut(s) 180
AjiI CACGTC 1 cut(s) 181
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 174
AoxI GGCC 2 cut(s) 65, 108
ApeKI GCWGC 3 cut(s) 47, 61, 98
AspLEI GCGC 2 cut(s) 47, 73
AvaI CYCGRG 1 cut(s) 174
BalI TGGCCA 1 cut(s) 110
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 48, 59, 85
BcoDI GTCTC 1 cut(s) 34
BisI GCNGC 6 cut(s) 21, 48, 62, 65, 96, 99
BlsI GCNGC 6 cut(s) 22, 49, 63, 66, 97, 100
BmeT110I CYCGRG 1 cut(s) 174
BmgBI CACGTC 1 cut(s) 181
BmsI GCATC 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 102
Bse118I RCCGGY 1 cut(s) 67
BseGI GGATG 1 cut(s) 162
BseMII CTCAG 2 cut(s) 93, 144
BseRI GAGGAG 2 cut(s) 149, 152
BseX3I CGGCCG 1 cut(s) 65
BseXI GCAGC 3 cut(s) 48, 59, 85
Bsh1236I CGCG 1 cut(s) 45
Bsh1285I CGRYCG 1 cut(s) 68
BshFI GGCC 2 cut(s) 67, 110
BsiEI CGRYCG 1 cut(s) 68
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 1 cut(s) 68
BslFI GGGAC 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 34
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 2 cut(s) 67, 110
BsoBI CYCGRG 1 cut(s) 174
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 4 cut(s) 20, 64, 79, 95
BspANI GGCC 2 cut(s) 67, 110
BspCNI CTCAG 2 cut(s) 94, 143
BspFNI CGCG 1 cut(s) 45
BspPI GGATC 1 cut(s) 96
BsrBI CCGCTC 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 67
BssAI RCCGGY 1 cut(s) 67
BssMI GATC 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 69, 162
BstDEI CTNAG 2 cut(s) 102, 130
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 45
BstHHI GCGC 2 cut(s) 47, 73
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 88
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 5 cut(s) 26, 35, 44, 70, 107
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 48, 59, 85
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BstZI CGGCCG 1 cut(s) 65
BsuRI GGCC 2 cut(s) 67, 110
BtrI CACGTC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 69, 162
CfoI GCGC 2 cut(s) 47, 73
Cfr10I RCCGGY 1 cut(s) 67
CseI GACGC 1 cut(s) 51
CviJI RGCY 6 cut(s) 23, 29, 61, 67, 98, 110
CviKI_1 RGCY 6 cut(s) 23, 29, 61, 67, 98, 110
DdeI CTNAG 2 cut(s) 102, 130
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
EaeI YGGCCR 2 cut(s) 65, 108
EagI CGGCCG 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 65
Eco52I CGGCCG 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 34
FaqI GGGAC 1 cut(s) 191
Fnu4HI GCNGC 6 cut(s) 21, 48, 62, 65, 96, 99
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 6 cut(s) 21, 48, 62, 65, 96, 99
GlaI GCGC 2 cut(s) 46, 72
GluI GCNGC 6 cut(s) 21, 48, 62, 65, 96, 99
HaeIII GGCC 2 cut(s) 67, 110
HapII CCGG 1 cut(s) 68
HgaI GACGC 1 cut(s) 51
HhaI GCGC 2 cut(s) 47, 73
Hin6I GCGC 2 cut(s) 45, 71
HinP1I GCGC 2 cut(s) 45, 71
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 35, 44, 70, 107
HpyF3I CTNAG 2 cut(s) 102, 130
HpySE526I ACGT 1 cut(s) 180
HspAI GCGC 2 cut(s) 45, 71
KroI GCCGGC 1 cut(s) 67
KroNI GCCGGC 1 cut(s) 69
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 3 cut(s) 59, 77, 81
Lsp1109I GCAGC 3 cut(s) 48, 59, 85
LweI GCATC 1 cut(s) 147
MaeII ACGT 1 cut(s) 180
MalI GATC 1 cut(s) 90
MbiI CCGCTC 1 cut(s) 79
MboI GATC 1 cut(s) 88
MflI RGATCY 1 cut(s) 88
MlsI TGGCCA 1 cut(s) 110
MluNI TGGCCA 1 cut(s) 110
MnlI CCTC 4 cut(s) 97, 127, 130, 133
Mox20I TGGCCA 1 cut(s) 110
MroNI GCCGGC 1 cut(s) 67
MscI TGGCCA 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 110
MspI CCGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 5 cut(s) 26, 35, 44, 70, 107
NaeI GCCGGC 1 cut(s) 69
NdeII GATC 1 cut(s) 88
NgoMIV GCCGGC 1 cut(s) 67
PdiI GCCGGC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 6 cut(s) 22, 49, 63, 66, 97, 100
PsuI RGATCY 1 cut(s) 88
SatI GCNGC 6 cut(s) 21, 48, 62, 65, 96, 99
Sau3AI GATC 1 cut(s) 88
SetI ASST 3 cut(s) 63, 108, 183
SfaNI GCATC 1 cut(s) 147
SsiI CCGC 4 cut(s) 20, 64, 79, 95
TaiI ACGT 1 cut(s) 183
TaqII GACCGA 1 cut(s) 184
TauI GCSGC 3 cut(s) 23, 67, 98
TfiI GAWTC 1 cut(s) 116
TseI GCWGC 3 cut(s) 47, 61, 98
TspDTI ATGAA 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.