RLG00000001966

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0024321
Physical Location & Seq
Forward (+)
23691283 .. 23692576
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001966

Sequence Viewer

Length: 324 bp
ATGCGAAACGGTGAGCCAGCAGCTTTCGCTTCAGTGGCGAACCGTGCCGCTGAGCCGCAGCTTCGGCTGGTGCATGAGCGGAAAATGGATCTGCCGGCTGTTGAGGTGGCCATTCGGAGGGGTGCAGCAGATTGGCCTTCGTCTCTGTTCGGGTTTTCTCCTCTCCCAACACGTATTCCTCGCAAACCAATCTCTCTTCCTCTCACTTTGAAGCTTCTTCTTCTCTGCTTCAGGTGTCTGTCATTCAGTCGTGCTCCCAAAGTACCAGTAAGGTGTTACAAGCTTTGCAACAGAAGTTCCCAGTCGCGTCAAAGACTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.03

Weight (kDa)

11.3

Isoelectric Point (pI)

57.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024321)

Species Orthologous Gene IDs
malus_domestica MD09G1242400.v1.1
rosa_laevigata RLG00000001966
rosa_samantha Rh4AG351500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 79
AccII CGCG 1 cut(s) 307
AciI CCGC 3 cut(s) 48, 56, 79
AclWI GGATC 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 108
AcuI CTGAAG 2 cut(s) 15, 214
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 117
AflIII ACRYGT 1 cut(s) 170
AgsI TTSAA 1 cut(s) 211
AluBI AGCT 4 cut(s) 23, 61, 214, 283
AluI AGCT 4 cut(s) 23, 61, 214, 283
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 96
AoxI GGCC 2 cut(s) 108, 134
ApeKI GCWGC 3 cut(s) 20, 58, 125
AsuHPI GGTGA 1 cut(s) 23
BalI TGGCCA 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 3 cut(s) 32, 70, 137
BcoDI GTCTC 1 cut(s) 147
BisI GCNGC 5 cut(s) 21, 48, 56, 59, 126
BlpI GCTNAGC 1 cut(s) 51
BlsI GCNGC 5 cut(s) 22, 49, 57, 60, 127
BmrI ACTGGG 1 cut(s) 295
BmuI ACTGGG 1 cut(s) 295
Bpu1102I GCTNAGC 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 266, 301
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 2 cut(s) 266, 301
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 3 cut(s) 32, 70, 137
BsgI GTGCAG 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 307
BshFI GGCC 2 cut(s) 110, 136
BsiHKAI GWGCWC 1 cut(s) 256
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsnI GGCC 2 cut(s) 110, 136
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 1 cut(s) 88
Bsp1720I GCTNAGC 1 cut(s) 51
BspACI CCGC 3 cut(s) 48, 56, 79
BspANI GGCC 2 cut(s) 110, 136
BspCNI CTCAG 1 cut(s) 43
BspFNI CGCG 1 cut(s) 307
BspPI GGATC 1 cut(s) 96
BsrBI CCGCTC 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 2 cut(s) 266, 301
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 11, 44
Bst6I CTCTTC 1 cut(s) 201
BstBAI YACGTR 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 18, 96
BstDEI CTNAG 2 cut(s) 51, 317
BstFNI CGCG 1 cut(s) 307
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 4 cut(s) 26, 35, 44, 64
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 3 cut(s) 32, 70, 137
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 2 cut(s) 110, 136
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 18, 96
Cfr10I RCCGGY 1 cut(s) 94
CseI GACGC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 263
CviAII CATG 1 cut(s) 74
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 2 cut(s) 51, 317
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco57I CTGAAG 2 cut(s) 15, 214
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 1 cut(s) 77
FaiI YATR 1 cut(s) 75
FatI CATG 1 cut(s) 73
Fnu4HI GCNGC 5 cut(s) 21, 48, 56, 59, 126
Fsp4HI GCNGC 5 cut(s) 21, 48, 56, 59, 126
GluI GCNGC 5 cut(s) 21, 48, 56, 59, 126
HaeIII GGCC 2 cut(s) 110, 136
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 296
Hin1II CATG 1 cut(s) 77
HindIII AAGCTT 2 cut(s) 212, 281
HinfI GANTC 1 cut(s) 315
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 23
Hpy188I TCNGA 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 2 cut(s) 11, 44
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 3 cut(s) 73, 125, 288
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 35, 44, 64
HpyF3I CTNAG 2 cut(s) 51, 317
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 1 cut(s) 77
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 6 cut(s) 30, 53, 108, 217, 279, 314
Lsp1109I GCAGC 3 cut(s) 32, 70, 137
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 90
MbiI CCGCTC 1 cut(s) 79
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 188, 209, 212
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 256
MlsI TGGCCA 1 cut(s) 110
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 1 cut(s) 309
MnlI CCTC 5 cut(s) 97, 111, 171, 189, 210
Mox20I TGGCCA 1 cut(s) 110
MroNI GCCGGC 1 cut(s) 94
MscI TGGCCA 1 cut(s) 110
MseI TTAA 1 cut(s) 322
Msp20I TGGCCA 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 95
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 4 cut(s) 26, 35, 44, 64
NaeI GCCGGC 1 cut(s) 96
NdeII GATC 1 cut(s) 88
NgoMIV GCCGGC 1 cut(s) 94
NlaIII CATG 1 cut(s) 77
PdiI GCCGGC 1 cut(s) 96
PkrI GCNGC 5 cut(s) 22, 49, 57, 60, 127
PleI GAGTC 1 cut(s) 309
PpsI GAGTC 1 cut(s) 309
Ppu21I YACGTR 1 cut(s) 173
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 322
SatI GCNGC 5 cut(s) 21, 48, 56, 59, 126
Sau3AI GATC 1 cut(s) 88
SchI GAGTC 1 cut(s) 309
SduI GDGCHC 1 cut(s) 256
SetI ASST 8 cut(s) 25, 63, 108, 175, 216, 236, 275, 285
SsiI CCGC 3 cut(s) 48, 56, 79
TaaI ACNGT 2 cut(s) 11, 44
TaiI ACGT 1 cut(s) 175
TauI GCSGC 2 cut(s) 50, 58
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TscAI CASTG 1 cut(s) 39
TseI GCWGC 3 cut(s) 20, 58, 125
TspRI CASTG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.