MD09G1261200.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0024317
Physical Location & Seq
Forward (+)
33405929 .. 33407734
1806 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1261200.v1.1.491

Sequence Viewer

Length: 795 bp
ATGTTCTGCCATTACCTGGGCCTTTCTCTCCCTCTTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTACAGAATGAGAAAACCTTGCTGTGAAAAAGAAGGCACAAACAAAGGAGCTTGGTCTAAACAAGAAGACCAAAAACTCATTGATTACATTAAGACTCATGGGGAAGGCTGCTGGCGATCTCTCCCCAAGGCTGCAGGGTTGCACCGGTGTGGCAAAAGTTGTAGGCTAAGATGGATAAACTATTTAAGGCCAGACATCAAACGTGGTAACTTTGAGCAAGATGAAGAAGAACTCATCATCAAACTACATGCCCTCCTTGGCAACCGGTGGTCGTTGATTGCTGGAAGGCTGCCCGGTAGGACGGACAATGAGGTTAAGAACTACTGGAATTCTCACATCCGGAAGAAGCTAATAAAAATGGGTATTGATCCAAATAACCATAGGCTAAACCAGATTATTCCTCGTCCAAATCCGCAAAACGATAGCGTTTCACCTGCTGCAACATCATCTGGGTCAATGAGCAATATTAATGCATGTACTAAAACACCATTGAAATCCTCAGATGATCAAATTGATCATAGGGCCTCAGAAGCTGCGAGTGTTCTTGAAGATGAAACATCTGGTCCATCATCTCGTGACTTGAATCTTGACCTCACCATTGCATTTCCTGAACCTTCACTACAGGTTGAGGAAGGGATGCCAAAGCTTATCAAGGGGTCGAACACTACTGCTAGAGAAATCGAAACAAACCTCCAGCATTTGCCTACCCTTGTGCTTTTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

265

Amino Acids

29.74

Weight (kDa)

8.93

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 38 - 85 1.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 41 - 100 2.4e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 91 - 135 4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 95 - 140 4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024317)

Species Orthologous Gene IDs
malus_domestica MD09G1261200.v1.1
prunus_persica Prupe.3G158700_v2.0.a1
pyrus_communis pycom09g17570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 511
Acc36I ACCTGC 1 cut(s) 511
AccB7I CCANNNNNTGG 1 cut(s) 16
AccIII TCCGGA 1 cut(s) 408
AciI CCGC 1 cut(s) 482
AclWI GGATC 1 cut(s) 431
AcsI RAATTY 1 cut(s) 397
AfaI GTAC 2 cut(s) 71, 547
AfiI CCNNNNNNNGG 1 cut(s) 16
AgeI ACCGGT 2 cut(s) 213, 333
AgsI TTSAA 3 cut(s) 562, 617, 652
AjnI CCWGG 1 cut(s) 15
AleI CACNNNNGTG 1 cut(s) 216
AluBI AGCT 4 cut(s) 119, 418, 602, 715
AluI AGCT 4 cut(s) 119, 418, 602, 715
AlwI GGATC 1 cut(s) 431
AlwNI CAGNNNCTG 1 cut(s) 602
Aor13HI TCCGGA 1 cut(s) 408
AoxI GGCC 3 cut(s) 19, 257, 591
ApeKI GCWGC 5 cut(s) 177, 200, 358, 506, 602
ApoI RAATTY 1 cut(s) 397
AseI ATTAAT 1 cut(s) 537
AsiGI ACCGGT 2 cut(s) 213, 333
AspS9I GGNCC 3 cut(s) 19, 591, 632
AsuC2I CCSGG 1 cut(s) 363
AsuHPI GGTGA 2 cut(s) 492, 655
AvaII GGWCC 1 cut(s) 632
BauI CACGAG 1 cut(s) 642
BbsI GAAGAC 1 cut(s) 141
BbvI GCAGC 5 cut(s) 164, 187, 345, 493, 589
BccI CCATC 2 cut(s) 234, 643
BciT130I CCWGG 1 cut(s) 17
BclI TGATCA 2 cut(s) 574, 583
BcnI CCSGG 1 cut(s) 363
BfaI CTAG 1 cut(s) 741
BfmI CTRYAG 2 cut(s) 201, 689
BfuAI ACCTGC 1 cut(s) 511
BisI GCNGC 5 cut(s) 178, 201, 359, 507, 603
BlsI GCNGC 5 cut(s) 179, 202, 360, 508, 604
Bme1390I CCNGG 2 cut(s) 17, 363
Bme18I GGWCC 1 cut(s) 632
BmgT120I GGNCC 3 cut(s) 19, 591, 632
BmrFI CCNGG 2 cut(s) 17, 363
BmsI GCATC 1 cut(s) 696
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 746
BpuMI CCSGG 1 cut(s) 363
BsaJI CCNNGG 3 cut(s) 16, 195, 325
BsaWI WCCGGW 3 cut(s) 213, 333, 408
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse118I RCCGGY 2 cut(s) 213, 333
Bse1I ACTGG 1 cut(s) 398
Bse3DI GCAATG 1 cut(s) 666
BseAI TCCGGA 1 cut(s) 408
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 3 cut(s) 16, 195, 325
BseGI GGATG 2 cut(s) 405, 711
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 2 cut(s) 582, 609
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 5 cut(s) 164, 187, 345, 493, 589
BshFI GGCC 3 cut(s) 21, 259, 593
BshTI ACCGGT 2 cut(s) 213, 333
BsiSI CCGG 4 cut(s) 214, 334, 363, 409
BslI CCNNNNNNNGG 1 cut(s) 16
BsnI GGCC 3 cut(s) 21, 259, 593
Bsp13I TCCGGA 1 cut(s) 408
Bsp143I GATC 4 cut(s) 185, 436, 574, 583
BspACI CCGC 1 cut(s) 482
BspANI GGCC 3 cut(s) 21, 259, 593
BspCNI CTCAG 2 cut(s) 581, 608
BspEI TCCGGA 1 cut(s) 408
BspMAI CTGCAG 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 511
BspPI GGATC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 666
BsrFI RCCGGY 2 cut(s) 213, 333
BsrI ACTGG 1 cut(s) 398
BssAI RCCGGY 2 cut(s) 213, 333
BssECI CCNNGG 3 cut(s) 16, 195, 325
BssMI GATC 4 cut(s) 185, 436, 574, 583
BssSI CACGAG 1 cut(s) 642
BssT1I CCWWGG 2 cut(s) 195, 325
Bst2BI CACGAG 1 cut(s) 642
Bst2UI CCWGG 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 3 cut(s) 236, 568, 595
BstF5I GGATG 2 cut(s) 405, 711
BstKTI GATC 4 cut(s) 188, 439, 577, 586
BstMBI GATC 4 cut(s) 185, 436, 574, 583
BstMWI GCNNNNNNNGC 1 cut(s) 599
BstNI CCWGG 1 cut(s) 17
BstNSI RCATGY 2 cut(s) 320, 546
BstSCI CCNGG 2 cut(s) 15, 361
BstSFI CTRYAG 2 cut(s) 201, 689
BstV1I GCAGC 5 cut(s) 164, 187, 345, 493, 589
BstV2I GAAGAC 1 cut(s) 141
BsuRI GGCC 3 cut(s) 21, 259, 593
BtsCI GGATG 2 cut(s) 405, 711
BveI ACCTGC 1 cut(s) 511
Cac8I GCNNGC 1 cut(s) 182
CaiI CAGNNNCTG 1 cut(s) 602
Cfr10I RCCGGY 2 cut(s) 213, 333
Cfr13I GGNCC 3 cut(s) 19, 591, 632
Csp6I GTAC 2 cut(s) 70, 546
CspAI ACCGGT 2 cut(s) 213, 333
CviAII CATG 3 cut(s) 167, 317, 543
CviQI GTAC 2 cut(s) 70, 546
DdeI CTNAG 3 cut(s) 236, 568, 595
DpnI GATC 4 cut(s) 187, 438, 576, 585
DpnII GATC 4 cut(s) 185, 436, 574, 583
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco130I CCWWGG 2 cut(s) 195, 325
Eco47I GGWCC 1 cut(s) 632
EcoO109I RGGNCCY 1 cut(s) 591
EcoRI GAATTC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 2 cut(s) 195, 325
EcoT22I ATGCAT 1 cut(s) 544
ErhI CCWWGG 2 cut(s) 195, 325
FaeI CATG 3 cut(s) 170, 320, 546
FaiI YATR 5 cut(s) 168, 318, 450, 544, 588
FatI CATG 3 cut(s) 166, 316, 542
FbaI TGATCA 2 cut(s) 574, 583
Fnu4HI GCNGC 5 cut(s) 178, 201, 359, 507, 603
FokI GGATG 2 cut(s) 392, 718
Fsp4HI GCNGC 5 cut(s) 178, 201, 359, 507, 603
FspBI CTAG 1 cut(s) 741
GluI GCNGC 5 cut(s) 178, 201, 359, 507, 603
GsuI CTGGAG 1 cut(s) 746
HaeIII GGCC 3 cut(s) 21, 259, 593
HapII CCGG 4 cut(s) 214, 334, 363, 409
Hin1II CATG 3 cut(s) 170, 320, 546
HindIII AAGCTT 1 cut(s) 713
HinfI GANTC 2 cut(s) 163, 652
HpaII CCGG 4 cut(s) 214, 334, 363, 409
HphI GGTGA 2 cut(s) 492, 655
Hpy188I TCNGA 3 cut(s) 571, 598, 791
Hpy188III TCNNGA 5 cut(s) 409, 614, 644, 656, 677
HpyAV CCTTC 5 cut(s) 95, 167, 348, 693, 695
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 5 cut(s) 203, 211, 509, 542, 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 599
HpyF3I CTNAG 3 cut(s) 236, 568, 595
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 3 cut(s) 170, 320, 546
Kpn2I TCCGGA 1 cut(s) 408
Ksp22I TGATCA 2 cut(s) 574, 583
Kzo9I GATC 4 cut(s) 185, 436, 574, 583
LmnI GCTCC 1 cut(s) 116
Lsp1109I GCAGC 5 cut(s) 164, 187, 345, 493, 589
LweI GCATC 1 cut(s) 696
MaeI CTAG 1 cut(s) 741
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 275, 644
MalI GATC 4 cut(s) 187, 438, 576, 585
MboI GATC 4 cut(s) 185, 436, 574, 583
MboII GAAGA 6 cut(s) 26, 146, 305, 308, 424, 629
MluCI AATT 2 cut(s) 397, 579
MlyI GAGTC 1 cut(s) 157
Mph1103I ATGCAT 1 cut(s) 544
MroI TCCGGA 1 cut(s) 408
MseI TTAA 4 cut(s) 159, 254, 384, 537
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 4 cut(s) 214, 334, 363, 409
MspR9I CCNGG 2 cut(s) 17, 363
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 599
NciI CCSGG 1 cut(s) 363
NdeII GATC 4 cut(s) 185, 436, 574, 583
NlaIII CATG 3 cut(s) 170, 320, 546
NmuCI GTSAC 1 cut(s) 644
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 2 cut(s) 320, 546
OliI CACNNNNGTG 1 cut(s) 216
PaqCI CACCTGC 1 cut(s) 511
PfeI GAWTC 1 cut(s) 652
PflMI CCANNNNNTGG 1 cut(s) 16
PinAI ACCGGT 2 cut(s) 213, 333
PkrI GCNGC 5 cut(s) 179, 202, 360, 508, 604
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PshBI ATTAAT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspPI GGNCC 3 cut(s) 19, 591, 632
PsrI GAACNNNNNNTAC 2 cut(s) 672, 704
PstI CTGCAG 1 cut(s) 205
PstNI CAGNNNCTG 1 cut(s) 602
RsaI GTAC 2 cut(s) 71, 547
RsaNI GTAC 2 cut(s) 70, 546
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 4 cut(s) 159, 254, 384, 537
SatI GCNGC 5 cut(s) 178, 201, 359, 507, 603
Sau3AI GATC 4 cut(s) 185, 436, 574, 583
Sau96I GGNCC 3 cut(s) 19, 591, 632
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 17, 363
SfaNI GCATC 1 cut(s) 696
SfcI CTRYAG 2 cut(s) 201, 689
SgrAI CRCCGGYG 1 cut(s) 213
SinI GGWCC 1 cut(s) 632
SmiMI CAYNNNNRTG 1 cut(s) 216
Sse9I AATT 2 cut(s) 397, 579
SsiI CCGC 1 cut(s) 482
SspI AATATT 1 cut(s) 535
SspMI CTAG 1 cut(s) 741
StyD4I CCNGG 2 cut(s) 15, 361
StyI CCWWGG 2 cut(s) 195, 325
TaiI ACGT 1 cut(s) 274
TaqI TCGA 2 cut(s) 728, 750
TasI AATT 2 cut(s) 397, 579
TatI WGTACW 1 cut(s) 545
TfiI GAWTC 1 cut(s) 652
Tru1I TTAA 4 cut(s) 159, 254, 384, 537
Tru9I TTAA 4 cut(s) 159, 254, 384, 537
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 5 cut(s) 177, 200, 358, 506, 602
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 2 cut(s) 306, 636
TspGWI ACGGA 1 cut(s) 386
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 632
VspI ATTAAT 1 cut(s) 537
XapI RAATTY 1 cut(s) 397
XceI RCATGY 2 cut(s) 320, 546
XspI CTAG 1 cut(s) 741
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.