MD09G1262100.v1.1

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0024318
Physical Location & Seq
Forward (+)
33549914 .. 33552338
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1262100.v1.1.491

Sequence Viewer

Length: 1383 bp
ATGGCACCAATGTTGAAGTTCAATGTGCAAGTCAGCAAACCAGAGCTAATTCAACCTCAAAAACCAACCCCTAGAGAATTCAAATATTTATCCAACATTGATGACCAAAAAGGCCTAAGAAACCACATACCATTCGTCCATTTCTATCCCCCAAGCTTAGCCTCGTCATCCAAAGATCCAGTTGTGATGATCAAACAGGCCTTGGCCAAGGCCCTCGTTTACTACTATCCGGTGGCCGGGAGGCTCCGGTGTGCCGCTAAGGGTAAGCTTGTTGTGGACTGTTGTGGTGAGGGAGTGGTGTTTCGTGAAGGCGATGCCAATATCAAACTAGCACAACTGCATCAAGTTGAAGGTGGACCGAAGCCACCATTTCCACAATGGGAATGTTTTCTTGTGGATGATTTATTGGGTAGCGTCCTCATCACTGATTCACCTTTGCTTCGCATGCAGGTCACAAGGCTTGCATGCGGAGGGTTTGTGTTAGCATACACATTCAACCACTGCATCTGTGATGCCTATGGCGCTTACCTCTTCATGAAAGCCGTTTCAGAATTCTGCTTGAATCCAACTCGAACTGCTCCATCGTCGTTACCATCTTGGGGAAGAGAAACTCTCAACCCCAGGTCACCTCCCACCATCTCCTACCCCCACCATGAGTATGACATAACTAGTAGTACTAATCATGATCCTACCATTTCTTACGCAGAAAGCGACTTCAAATCTCTTGCTCAAACATCACTGTTCCTCTCTCAGGCTGACATATCATCTCTCAAAAACCAAATTAGTCCCAGATGTCCCTCCTTTGATGCAATCGCGGGGTGTTTATGGAGGGTGAGGACTCGAACCCTAATGAGCCCTCAATCCACTACAAGGCTTCTCTTCCCTATTGATACCCGTTTTCGATCCAAGCCATCCCTTCCCAATGGCTATTACGGATGCGCTGTCGTGTTCCCATGCGCAATTGCAAAGGCAGCCGAACTAGTCAACAGTCCGTTATATTATGCTTCAAACTTGATCTCACAAGCGAAGAAGAGCGTCGTTGGGGAGGAGTATAGAGCTTCGGTTTTGGATTTCATTGAGATGAATGGGCGTAGAGGGTTTTGTTCGGAAGGGACGTTTGTGGTTTCGGACATGACCCGATTGCGGTTTGTTGATATGGATTTTGGTTGGGGGAAAGGTGTGTATGGTGGACCAGCAAGAGCTGGAACTGGGGTTGTACCTGGAATGGTGACTTCAGTTATTGCGCACAAAAATGAAGAGGGTGTTGAAGGAGTGTTGGTTCTGGTTTCACTACCTGTGGAGTCATTGGACAAGTTCCATGAAGAGGTAAGGAAAGAGATTGACAGGGGTATTTCTTCTGCCATACACATTTCTACATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

461

Amino Acids

50.75

Weight (kDa)

8.46

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 8 - 443 3.9e-70 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024318)

Species Orthologous Gene IDs
malus_domestica MD09G1262100.v1.1
prunus_persica Prupe.3G159900_v2.0.a1
pyrus_communis pycom09g17650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 958, 1245
Acc36I ACCTGC 1 cut(s) 439
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 815
AciI CCGC 4 cut(s) 255, 468, 815, 1144
AclWI GGATC 3 cut(s) 170, 680, 897
AcoI YGGCCR 2 cut(s) 204, 234
AcsI RAATTY 2 cut(s) 77, 551
AcuI CTGAAG 1 cut(s) 1218
AfaI GTAC 2 cut(s) 676, 1218
AfiI CCNNNNNNNGG 6 cut(s) 236, 599, 751, 870, 1143, 1324
AhlI ACTAGT 2 cut(s) 668, 979
AjnI CCWGG 2 cut(s) 620, 1219
AloI GAACNNNNNNTCC 2 cut(s) 1263, 1295
AluBI AGCT 5 cut(s) 46, 156, 268, 1058, 1202
AluI AGCT 5 cut(s) 46, 156, 268, 1058, 1202
AlwI GGATC 3 cut(s) 170, 680, 897
AoxI GGCC 5 cut(s) 112, 198, 204, 210, 234
ApeKI GCWGC 1 cut(s) 971
ApoI RAATTY 2 cut(s) 77, 551
Asp700I GAANNNNTTC 1 cut(s) 387
AspLEI GCGC 4 cut(s) 524, 941, 959, 1246
AspS9I GGNCC 3 cut(s) 211, 356, 1190
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 5 cut(s) 299, 423, 618, 844, 1240
AvaII GGWCC 2 cut(s) 356, 1190
BalI TGGCCA 1 cut(s) 206
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 857
BbvI GCAGC 1 cut(s) 983
BccI CCATC 4 cut(s) 589, 601, 644, 919
BceAI ACGGC 1 cut(s) 527
BciT130I CCWGG 2 cut(s) 622, 1221
BclI TGATCA 1 cut(s) 189
BcnI CCSGG 1 cut(s) 238
BcuI ACTAGT 2 cut(s) 668, 979
BfaI CTAG 4 cut(s) 72, 329, 669, 980
BfoI RGCGCY 1 cut(s) 525
BfuAI ACCTGC 1 cut(s) 439
BisI GCNGC 2 cut(s) 255, 972
BlpI GCTNAGC 1 cut(s) 157
BlsI GCNGC 2 cut(s) 256, 973
BmcAI AGTACT 1 cut(s) 676
Bme1390I CCNGG 3 cut(s) 238, 622, 1221
Bme18I GGWCC 2 cut(s) 356, 1190
BmgT120I GGNCC 3 cut(s) 211, 356, 1190
BmiI GGNNCC 2 cut(s) 6, 245
BmrFI CCNGG 3 cut(s) 238, 622, 1221
BmrI ACTGGG 1 cut(s) 1218
BmsI GCATC 6 cut(s) 304, 349, 502, 513, 796, 926
BmuI ACTGGG 1 cut(s) 1218
BplI GAGNNNNNCTC 2 cut(s) 597, 629
Bpu10I CCTNAGC 1 cut(s) 258
Bpu1102I GCTNAGC 1 cut(s) 157
BpuMI CCSGG 1 cut(s) 238
BsaJI CCNNGG 3 cut(s) 201, 207, 620
BsaWI WCCGGW 2 cut(s) 229, 246
BsaXI ACNNNNNCTCC 4 cut(s) 462, 492, 1263, 1293
Bsc4I CCNNNNNNNGG 6 cut(s) 236, 599, 751, 870, 1143, 1324
Bse1I ACTGG 2 cut(s) 179, 1213
BseBI CCWGG 2 cut(s) 622, 1221
BseDI CCNNGG 3 cut(s) 201, 207, 620
BseGI GGATG 4 cut(s) 167, 403, 911, 941
BseLI CCNNNNNNNGG 6 cut(s) 236, 599, 751, 870, 1143, 1324
BseMII CTCAG 1 cut(s) 764
BseNI ACTGG 2 cut(s) 179, 1213
BseRI GAGGAG 1 cut(s) 1061
BseXI GCAGC 1 cut(s) 983
Bsh1236I CGCG 1 cut(s) 815
BshFI GGCC 5 cut(s) 114, 200, 206, 212, 236
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 3 cut(s) 230, 237, 247
BslFI GGGAC 3 cut(s) 771, 780, 1126
BslI CCNNNNNNNGG 6 cut(s) 236, 599, 751, 870, 1143, 1324
BsmFI GGGAC 3 cut(s) 771, 780, 1126
BsnI GGCC 5 cut(s) 114, 200, 206, 212, 236
Bsp1286I GDGCHC 1 cut(s) 857
Bsp143I GATC 5 cut(s) 175, 189, 685, 902, 1014
Bsp1720I GCTNAGC 1 cut(s) 157
BspACI CCGC 4 cut(s) 255, 468, 815, 1144
BspANI GGCC 5 cut(s) 114, 200, 206, 212, 236
BspCNI CTCAG 1 cut(s) 763
BspFNI CGCG 1 cut(s) 815
BspHI TCATGA 2 cut(s) 534, 682
BspLI GGNNCC 2 cut(s) 6, 245
BspMI ACCTGC 1 cut(s) 439
BspPI GGATC 3 cut(s) 170, 680, 897
BspQI GCTCTTC 1 cut(s) 1025
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 2 cut(s) 179, 1213
BssECI CCNNGG 3 cut(s) 201, 207, 620
BssMI GATC 5 cut(s) 175, 189, 685, 902, 1014
BssT1I CCWWGG 2 cut(s) 201, 207
Bst2UI CCWGG 2 cut(s) 622, 1221
Bst4CI ACNGT 3 cut(s) 281, 741, 989
Bst6I CTCTTC 6 cut(s) 536, 598, 884, 1025, 1251, 1317
BstC8I GCNNGC 3 cut(s) 446, 462, 466
BstDEI CTNAG 4 cut(s) 116, 157, 258, 750
BstEII GGTNACC 1 cut(s) 624
BstENI CCTNNNNNAGG 1 cut(s) 749
BstF5I GGATG 4 cut(s) 167, 403, 911, 941
BstFNI CGCG 1 cut(s) 815
BstH2I RGCGCY 1 cut(s) 525
BstHHI GCGC 4 cut(s) 524, 941, 959, 1246
BstKTI GATC 5 cut(s) 178, 192, 688, 905, 1017
BstMBI GATC 5 cut(s) 175, 189, 685, 902, 1014
BstMWI GCNNNNNNNGC 3 cut(s) 445, 521, 971
BstNI CCWGG 2 cut(s) 622, 1221
BstNSI RCATGY 2 cut(s) 448, 468
BstPI GGTNACC 1 cut(s) 624
BstSCI CCNGG 3 cut(s) 236, 620, 1219
BstUI CGCG 1 cut(s) 815
BstV1I GCAGC 1 cut(s) 983
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 5 cut(s) 114, 200, 206, 212, 236
BtgZI GCGATG 1 cut(s) 327
BtsCI GGATG 4 cut(s) 167, 403, 911, 941
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 3 cut(s) 423, 499, 737
BveI ACCTGC 1 cut(s) 439
Cac8I GCNNGC 3 cut(s) 446, 462, 466
CciI TCATGA 2 cut(s) 534, 682
CfoI GCGC 4 cut(s) 524, 941, 959, 1246
Cfr13I GGNCC 3 cut(s) 211, 356, 1190
CseI GACGC 2 cut(s) 403, 1024
Csp6I GTAC 2 cut(s) 675, 1217
CviAII CATG 8 cut(s) 445, 465, 535, 653, 683, 954, 1132, 1319
CviQI GTAC 2 cut(s) 675, 1217
DdeI CTNAG 4 cut(s) 116, 157, 258, 750
DpnI GATC 5 cut(s) 177, 191, 687, 904, 1016
DpnII GATC 5 cut(s) 175, 189, 685, 902, 1014
EaeI YGGCCR 2 cut(s) 204, 234
Eam1104I CTCTTC 6 cut(s) 536, 598, 884, 1025, 1251, 1317
EarI CTCTTC 6 cut(s) 536, 598, 884, 1025, 1251, 1317
Eco130I CCWWGG 2 cut(s) 201, 207
Eco147I AGGCCT 2 cut(s) 114, 200
Eco24I GRGCYC 1 cut(s) 857
Eco47I GGWCC 2 cut(s) 356, 1190
Eco57I CTGAAG 1 cut(s) 1218
Eco91I GGTNACC 1 cut(s) 624
EcoNI CCTNNNNNAGG 1 cut(s) 749
EcoO109I RGGNCCY 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 624
EcoRI GAATTC 2 cut(s) 77, 551
EcoRII CCWGG 2 cut(s) 620, 1219
EcoT14I CCWWGG 2 cut(s) 201, 207
EcoT38I GRGCYC 1 cut(s) 857
ErhI CCWWGG 2 cut(s) 201, 207
FaeI CATG 8 cut(s) 448, 468, 538, 656, 686, 957, 1135, 1322
FaqI GGGAC 3 cut(s) 771, 780, 1126
FatI CATG 8 cut(s) 444, 464, 534, 652, 682, 953, 1131, 1318
FauI CCCGC 1 cut(s) 808
FbaI TGATCA 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 255, 972
FokI GGATG 4 cut(s) 154, 410, 898, 948
FriOI GRGCYC 1 cut(s) 857
Fsp4HI GCNGC 2 cut(s) 255, 972
FspBI CTAG 4 cut(s) 72, 329, 669, 980
FspI TGCGCA 2 cut(s) 958, 1245
GlaI GCGC 4 cut(s) 523, 940, 958, 1245
GluI GCNGC 2 cut(s) 255, 972
HaeII RGCGCY 1 cut(s) 525
HaeIII GGCC 5 cut(s) 114, 200, 206, 212, 236
HapII CCGG 3 cut(s) 230, 237, 247
HgaI GACGC 2 cut(s) 403, 1024
HhaI GCGC 4 cut(s) 524, 941, 959, 1246
Hin1II CATG 8 cut(s) 448, 468, 538, 656, 686, 957, 1135, 1322
Hin6I GCGC 4 cut(s) 522, 939, 957, 1244
HinP1I GCGC 4 cut(s) 522, 939, 957, 1244
HincII GTYRAC 1 cut(s) 985
HindII GTYRAC 1 cut(s) 985
HindIII AAGCTT 2 cut(s) 154, 266
HinfI GANTC 4 cut(s) 428, 562, 838, 1301
HpaII CCGG 3 cut(s) 230, 237, 247
HphI GGTGA 5 cut(s) 299, 423, 618, 844, 1240
Hpy166II GTNNAC 5 cut(s) 220, 277, 356, 985, 1190
Hpy188I TCNGA 3 cut(s) 550, 1108, 1129
Hpy188III TCNNGA 3 cut(s) 305, 535, 683
Hpy8I GTNNAC 5 cut(s) 220, 277, 356, 985, 1190
Hpy99I CGWCG 2 cut(s) 589, 1040
HpyAV CCTTC 5 cut(s) 302, 344, 926, 1103, 1262
HpyCH4III ACNGT 3 cut(s) 281, 741, 989
HpyCH4IV ACGT 1 cut(s) 1115
HpyCH4V TGCA 7 cut(s) 28, 340, 448, 464, 504, 809, 965
HpyF10VI GCNNNNNNNGC 3 cut(s) 445, 521, 971
HpyF3I CTNAG 4 cut(s) 116, 157, 258, 750
HpySE526I ACGT 1 cut(s) 1115
Hsp92II CATG 8 cut(s) 448, 468, 538, 656, 686, 957, 1135, 1322
HspAI GCGC 4 cut(s) 522, 939, 957, 1244
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 5 cut(s) 175, 189, 685, 902, 1014
LguI GCTCTTC 1 cut(s) 1025
LmnI GCTCC 2 cut(s) 249, 583
Lsp1109I GCAGC 1 cut(s) 983
LweI GCATC 6 cut(s) 304, 349, 502, 513, 796, 926
MaeI CTAG 4 cut(s) 72, 329, 669, 980
MaeII ACGT 1 cut(s) 1115
MaeIII GTNAC 4 cut(s) 451, 588, 624, 1228
MalI GATC 5 cut(s) 177, 191, 687, 904, 1016
MboI GATC 5 cut(s) 175, 189, 685, 902, 1014
MboII GAAGA 8 cut(s) 523, 615, 871, 1039, 1042, 1268, 1334, 1347
MfeI CAATTG 1 cut(s) 960
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 857
MlsI TGGCCA 1 cut(s) 206
MluCI AATT 5 cut(s) 48, 77, 551, 780, 960
MluNI TGGCCA 1 cut(s) 206
MlyI GAGTC 2 cut(s) 832, 1310
MmeI TCCRAC 2 cut(s) 117, 590
Mox20I TGGCCA 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 387
MscI TGGCCA 1 cut(s) 206
MslI CAYNNNNRTG 3 cut(s) 657, 1079, 1251
Msp20I TGGCCA 1 cut(s) 206
MspI CCGG 3 cut(s) 230, 237, 247
MspR9I CCNGG 3 cut(s) 238, 622, 1221
MunI CAATTG 1 cut(s) 960
MvaI CCWGG 2 cut(s) 622, 1221
MvnI CGCG 1 cut(s) 815
MwoI GCNNNNNNNGC 3 cut(s) 445, 521, 971
NciI CCSGG 1 cut(s) 238
NdeII GATC 5 cut(s) 175, 189, 685, 902, 1014
NlaIII CATG 8 cut(s) 448, 468, 538, 656, 686, 957, 1135, 1322
NlaIV GGNNCC 2 cut(s) 6, 245
NmuCI GTSAC 3 cut(s) 451, 624, 1228
NsbI TGCGCA 2 cut(s) 958, 1245
NspI RCATGY 2 cut(s) 448, 468
PaeI GCATGC 2 cut(s) 448, 468
PagI TCATGA 2 cut(s) 534, 682
PceI AGGCCT 2 cut(s) 114, 200
PciSI GCTCTTC 1 cut(s) 1025
PcsI WCGNNNNNNNCGW 2 cut(s) 708, 1112
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 428, 562
PkrI GCNGC 2 cut(s) 256, 973
PleI GAGTC 2 cut(s) 832, 1309
PpsI GAGTC 2 cut(s) 832, 1309
Psp6I CCWGG 2 cut(s) 620, 1219
PspEI GGTNACC 1 cut(s) 624
PspGI CCWGG 2 cut(s) 620, 1219
PspN4I GGNNCC 2 cut(s) 6, 245
PspPI GGNCC 3 cut(s) 211, 356, 1190
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 2 cut(s) 676, 1218
RsaNI GTAC 2 cut(s) 675, 1217
RseI CAYNNNNRTG 3 cut(s) 657, 1079, 1251
SapI GCTCTTC 1 cut(s) 1025
SatI GCNGC 2 cut(s) 255, 972
Sau3AI GATC 5 cut(s) 175, 189, 685, 902, 1014
Sau96I GGNCC 3 cut(s) 211, 356, 1190
ScaI AGTACT 1 cut(s) 676
SchI GAGTC 2 cut(s) 832, 1310
ScrFI CCNGG 3 cut(s) 238, 622, 1221
SduI GDGCHC 1 cut(s) 857
SfaNI GCATC 6 cut(s) 304, 349, 502, 513, 796, 926
SinI GGWCC 2 cut(s) 356, 1190
SmiMI CAYNNNNRTG 3 cut(s) 657, 1079, 1251
SpeI ACTAGT 2 cut(s) 668, 979
SphI GCATGC 2 cut(s) 448, 468
Sse9I AATT 5 cut(s) 48, 77, 551, 780, 960
SseBI AGGCCT 2 cut(s) 114, 200
SsiI CCGC 4 cut(s) 255, 468, 815, 1144
SspI AATATT 1 cut(s) 86
SspMI CTAG 4 cut(s) 72, 329, 669, 980
StuI AGGCCT 2 cut(s) 114, 200
StyD4I CCNGG 3 cut(s) 236, 620, 1219
StyI CCWWGG 2 cut(s) 201, 207
TaaI ACNGT 3 cut(s) 281, 741, 989
TaiI ACGT 1 cut(s) 1118
TaqI TCGA 3 cut(s) 571, 841, 901
TaqII GACCGA 1 cut(s) 373
TasI AATT 5 cut(s) 48, 77, 551, 780, 960
TatI WGTACW 1 cut(s) 674
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 2 cut(s) 428, 562
TscAI CASTG 3 cut(s) 430, 506, 744
TseFI GTSAC 3 cut(s) 451, 624, 1228
TseI GCWGC 1 cut(s) 971
Tsp45I GTSAC 3 cut(s) 451, 624, 1228
TspDTI ATGAA 6 cut(s) 523, 551, 1063, 1097, 1269, 1335
TspGWI ACGGA 2 cut(s) 948, 981
TspRI CASTG 3 cut(s) 430, 506, 744
VpaK11BI GGWCC 2 cut(s) 356, 1190
XagI CCTNNNNNAGG 1 cut(s) 749
XapI RAATTY 2 cut(s) 77, 551
XceI RCATGY 2 cut(s) 448, 468
XcmI CCANNNNNNNNNTGG 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 4 cut(s) 72, 329, 669, 980
ZrmI AGTACT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.