pycom09g17650

Benzyl alcohol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0024318
Physical Location & Seq
Forward (+)
18184417 .. 18187238
2822 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17650.1

Sequence Viewer

Length: 918 bp
ATGGTAAGGTTTGTGTTAGCATACACATTCAACCACTGCATCTGTGATGCCTATGGCGCTTACCTCTTCATGAAAGCCGTTTCAGAATTCTGCTTGAATCCAACTCAAACTGCTCCATCGTCGTTACCATCTTGGGGAAGAGAAACTCTCAACCCCAGGTCACCTCCCACCATCTCCTACCCCCACCATGAGTATGACATAGCTAGCAGTACTAATCATGATCCTACCATTTCTTACGCAGAAAGCGACTTCAAATCTCTTGCTCAAACATCACTGTTCCTCTCACAGGCTGACATATCATCTCTCAAAAACCAAATTAGTCCCAGATGCCCCTCCTTTGATGCAATCGCGGGGTGTTTATGGAGGGCGAGGACTCGAACCCTAATGAGCCCTCAATCCACTACAAGGCTTCTCTTCCCTATTGATACCCGTTTTCGATCCAAGCCATCCCTTCCCAATGGCTACTACGGATGCGCTGTCGTGTTCCCATGCGCAATTGCAAAGGCAGCCGAACTGGTCAACAGTCCGTTATATTATGCTTCAAACTTGATCTCGCAAGCGAAGAAGAGCGTCGTGGGGGAGGAGTATGGGGCTTCGGTTTTGGATTTCATTGAGATGAATGGGCGTAGAGGGTTTTGTTCGGAAGGGACGTTTGTGGTTTCGGACATGACCCGATTGCGGTTTGTTGATGTGGATTTTGGTTGGGGGAAAGGTGTGTATGGTGGACCAGCAAGAGCTGGAACTGGGGTCGTACCTGGAATGGTGACTTCAGTTATTGGGCACAAAAATGAAGAGGGCGTTGAAGGAGTGTTGGTTCTGGTTTCACTACCTGTGGAGTCATTGGACAAGTTCCATGAAGAGGTAAGGAAAGAGATTGACAGGGGTATTTCTTCTGCCATACACATTTCTGCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

306

Amino Acids

33.39

Weight (kDa)

6.65

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 4 - 288 1.3e-36 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024318)

Species Orthologous Gene IDs
malus_domestica MD09G1262100.v1.1
prunus_persica Prupe.3G159900_v2.0.a1
pyrus_communis pycom09g17650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 493
AccII CGCG 1 cut(s) 350
AciI CCGC 2 cut(s) 350, 679
AclWI GGATC 2 cut(s) 215, 432
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 753
AfaI GTAC 2 cut(s) 211, 753
AfiI CCNNNNNNNGG 5 cut(s) 134, 286, 405, 678, 859
AgsI TTSAA 5 cut(s) 31, 97, 253, 543, 803
AjnI CCWGG 2 cut(s) 155, 754
AloI GAACNNNNNNTCC 2 cut(s) 798, 830
AluBI AGCT 2 cut(s) 203, 737
AluI AGCT 2 cut(s) 203, 737
AlwI GGATC 2 cut(s) 215, 432
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 3 cut(s) 59, 476, 494
AspS9I GGNCC 1 cut(s) 725
AsuHPI GGTGA 2 cut(s) 153, 775
AsuNHI GCTAGC 1 cut(s) 203
AvaII GGWCC 1 cut(s) 725
BaeGI GKGCMC 1 cut(s) 783
BanII GRGCYC 1 cut(s) 392
BbvI GCAGC 1 cut(s) 518
BccI CCATC 4 cut(s) 124, 136, 179, 454
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 2 cut(s) 157, 756
BfaI CTAG 1 cut(s) 204
BfoI RGCGCY 1 cut(s) 60
BisI GCNGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 508
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 157, 756
Bme18I GGWCC 1 cut(s) 725
BmgT120I GGNCC 1 cut(s) 725
BmrFI CCNGG 2 cut(s) 157, 756
BmrI ACTGGG 1 cut(s) 753
BmsI GCATC 5 cut(s) 37, 48, 317, 331, 461
BmtI GCTAGC 1 cut(s) 207
BmuI ACTGGG 1 cut(s) 753
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BsaJI CCNNGG 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bsc4I CCNNNNNNNGG 5 cut(s) 134, 286, 405, 678, 859
Bse1I ACTGG 2 cut(s) 519, 748
BseBI CCWGG 2 cut(s) 157, 756
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 2 cut(s) 446, 476
BseLI CCNNNNNNNGG 5 cut(s) 134, 286, 405, 678, 859
BseNI ACTGG 2 cut(s) 519, 748
BseRI GAGGAG 1 cut(s) 596
BseSI GKGCMC 1 cut(s) 783
BseXI GCAGC 1 cut(s) 518
Bsh1236I CGCG 1 cut(s) 350
BslFI GGGAC 2 cut(s) 306, 661
BslI CCNNNNNNNGG 5 cut(s) 134, 286, 405, 678, 859
BsmFI GGGAC 2 cut(s) 306, 661
Bsp1286I GDGCHC 2 cut(s) 392, 783
Bsp143I GATC 3 cut(s) 220, 437, 549
BspACI CCGC 2 cut(s) 350, 679
BspFNI CGCG 1 cut(s) 350
BspHI TCATGA 2 cut(s) 69, 217
BspOI GCTAGC 1 cut(s) 207
BspPI GGATC 2 cut(s) 215, 432
BspQI GCTCTTC 1 cut(s) 560
BsrI ACTGG 2 cut(s) 519, 748
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 3 cut(s) 220, 437, 549
Bst2UI CCWGG 2 cut(s) 157, 756
Bst4CI ACNGT 2 cut(s) 276, 524
Bst6I CTCTTC 6 cut(s) 71, 133, 419, 560, 786, 852
BstC8I GCNNGC 2 cut(s) 205, 558
BstEII GGTNACC 1 cut(s) 159
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 2 cut(s) 446, 476
BstFNI CGCG 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 3 cut(s) 59, 476, 494
BstKTI GATC 3 cut(s) 223, 440, 552
BstMBI GATC 3 cut(s) 220, 437, 549
BstMWI GCNNNNNNNGC 2 cut(s) 56, 506
BstNI CCWGG 2 cut(s) 157, 756
BstPI GGTNACC 1 cut(s) 159
BstSCI CCNGG 2 cut(s) 155, 754
BstSLI GKGCMC 1 cut(s) 783
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 518
BtsCI GGATG 2 cut(s) 446, 476
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 34, 272
Cac8I GCNNGC 2 cut(s) 205, 558
CciI TCATGA 2 cut(s) 69, 217
CfoI GCGC 3 cut(s) 59, 476, 494
Cfr13I GGNCC 1 cut(s) 725
CseI GACGC 1 cut(s) 559
Csp6I GTAC 2 cut(s) 210, 752
CviAII CATG 6 cut(s) 70, 188, 218, 489, 667, 854
CviQI GTAC 2 cut(s) 210, 752
DpnI GATC 3 cut(s) 222, 439, 551
DpnII GATC 3 cut(s) 220, 437, 549
Eam1104I CTCTTC 6 cut(s) 71, 133, 419, 560, 786, 852
EarI CTCTTC 6 cut(s) 71, 133, 419, 560, 786, 852
Eco24I GRGCYC 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 725
Eco57I CTGAAG 1 cut(s) 753
Eco91I GGTNACC 1 cut(s) 159
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoO65I GGTNACC 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 155, 754
EcoT38I GRGCYC 1 cut(s) 392
FaeI CATG 6 cut(s) 73, 191, 221, 492, 670, 857
FaqI GGGAC 2 cut(s) 306, 661
FatI CATG 6 cut(s) 69, 187, 217, 488, 666, 853
FauI CCCGC 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 507
FokI GGATG 2 cut(s) 433, 483
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 1 cut(s) 507
FspBI CTAG 1 cut(s) 204
FspI TGCGCA 1 cut(s) 493
GlaI GCGC 3 cut(s) 58, 475, 493
GluI GCNGC 1 cut(s) 507
HaeII RGCGCY 1 cut(s) 60
HgaI GACGC 1 cut(s) 559
HhaI GCGC 3 cut(s) 59, 476, 494
Hin1II CATG 6 cut(s) 73, 191, 221, 492, 670, 857
Hin6I GCGC 3 cut(s) 57, 474, 492
HinP1I GCGC 3 cut(s) 57, 474, 492
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 3 cut(s) 97, 373, 836
HphI GGTGA 2 cut(s) 153, 775
Hpy166II GTNNAC 2 cut(s) 520, 725
Hpy188I TCNGA 3 cut(s) 85, 643, 664
Hpy188III TCNNGA 2 cut(s) 70, 218
Hpy8I GTNNAC 2 cut(s) 520, 725
Hpy99I CGWCG 2 cut(s) 124, 575
HpyAV CCTTC 3 cut(s) 461, 638, 797
HpyCH4III ACNGT 2 cut(s) 276, 524
HpyCH4IV ACGT 1 cut(s) 650
HpyCH4V TGCA 3 cut(s) 39, 344, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 506
HpySE526I ACGT 1 cut(s) 650
Hsp92II CATG 6 cut(s) 73, 191, 221, 492, 670, 857
HspAI GCGC 3 cut(s) 57, 474, 492
Kzo9I GATC 3 cut(s) 220, 437, 549
LguI GCTCTTC 1 cut(s) 560
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 1 cut(s) 518
LweI GCATC 5 cut(s) 37, 48, 317, 331, 461
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 650
MaeIII GTNAC 3 cut(s) 123, 159, 763
MalI GATC 3 cut(s) 222, 439, 551
MboI GATC 3 cut(s) 220, 437, 549
MboII GAAGA 8 cut(s) 58, 150, 406, 574, 577, 803, 869, 882
MfeI CAATTG 1 cut(s) 495
MhlI GDGCHC 2 cut(s) 392, 783
MluCI AATT 3 cut(s) 86, 315, 495
MlyI GAGTC 2 cut(s) 367, 845
MmeI TCCRAC 1 cut(s) 125
MslI CAYNNNNRTG 3 cut(s) 192, 614, 786
MspR9I CCNGG 2 cut(s) 157, 756
MunI CAATTG 1 cut(s) 495
MvaI CCWGG 2 cut(s) 157, 756
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 2 cut(s) 56, 506
NdeII GATC 3 cut(s) 220, 437, 549
NheI GCTAGC 1 cut(s) 203
NlaIII CATG 6 cut(s) 73, 191, 221, 492, 670, 857
NmuCI GTSAC 2 cut(s) 159, 763
NsbI TGCGCA 1 cut(s) 493
PagI TCATGA 2 cut(s) 69, 217
PciSI GCTCTTC 1 cut(s) 560
PcsI WCGNNNNNNNCGW 2 cut(s) 243, 647
PfeI GAWTC 1 cut(s) 97
PkrI GCNGC 1 cut(s) 508
PleI GAGTC 2 cut(s) 367, 844
PpsI GAGTC 2 cut(s) 367, 844
Psp6I CCWGG 2 cut(s) 155, 754
PspEI GGTNACC 1 cut(s) 159
PspGI CCWGG 2 cut(s) 155, 754
PspPI GGNCC 1 cut(s) 725
RsaI GTAC 2 cut(s) 211, 753
RsaNI GTAC 2 cut(s) 210, 752
RseI CAYNNNNRTG 3 cut(s) 192, 614, 786
SapI GCTCTTC 1 cut(s) 560
SatI GCNGC 1 cut(s) 507
Sau3AI GATC 3 cut(s) 220, 437, 549
Sau96I GGNCC 1 cut(s) 725
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 2 cut(s) 367, 845
ScrFI CCNGG 2 cut(s) 157, 756
SduI GDGCHC 2 cut(s) 392, 783
SfaNI GCATC 5 cut(s) 37, 48, 317, 331, 461
SinI GGWCC 1 cut(s) 725
SmiMI CAYNNNNRTG 3 cut(s) 192, 614, 786
Sse9I AATT 3 cut(s) 86, 315, 495
SsiI CCGC 2 cut(s) 350, 679
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 155, 754
TaaI ACNGT 2 cut(s) 276, 524
TaiI ACGT 1 cut(s) 653
TaqI TCGA 2 cut(s) 376, 436
TasI AATT 3 cut(s) 86, 315, 495
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 1 cut(s) 97
TscAI CASTG 2 cut(s) 41, 279
TseFI GTSAC 2 cut(s) 159, 763
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 2 cut(s) 159, 763
TspDTI ATGAA 6 cut(s) 58, 86, 598, 632, 804, 870
TspGWI ACGGA 2 cut(s) 483, 516
TspRI CASTG 2 cut(s) 41, 279
VpaK11BI GGWCC 1 cut(s) 725
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 1 cut(s) 86
XspI CTAG 1 cut(s) 204
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.