Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0028449

Physical Location & Seq

Genomic Coordinates Forward (+)

36180443 .. 36182330

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1284100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCAGTTTCTAAAATATTTTTTCACTTCCATTTGGTTAGCATTTGTTCTATTGCAGGGAATCAGTTCAATTATAGGAGCGATTGCCCATGACTTGGGAATTATAACTACACCGCAGCTGCATTGGATGGTTCGTGCTAGAAATAAGGGTTTGCAAGTATCAGACAGTGATTACTTCAAACAGCTATCAAGTTCGTTTAGGTTGGTTAGAGATAGAGATTTGATTCCTAGTGGAAATCATGCCTGCAGCATGGATGACAAGTTGGTTGTGGATGGGGCAAATGGTATTTGGAACTGTGGAAAAGAAGGAGGTGTACTGAATGAAGGAGCTGGTGCAGGTTATGTGCAGAAAGAGAAGGTTGCTCCTTGTAGTTTTGGTTCACAGGATGTTGGGATAAGGTCAGCCGTGTGCTATTTAGATGATGACGCTGATCGGCTTGTATATTTTATTGTACCATCTAGAAGTAACAACAAGATTGAACTTGTTGATGGGGACAAGATTTTTTCTTTCTTTGCTATATTCATCAAAAAGCAACTAAGCATTTATAATAAGGAAGTAGATGTCAATGGAATAACCGTTATCAGTGTCGCCTTGGATCGCACAAACAGCTTATGTGAATGGAGCCGGGAGCCTTGTGCACTGGGCTGTTGGGGATGCGTTGAGCGGAGACCTCTTGTCGAGGCTATTCTGAAACATACGGGCTGGTCAAGGTGGAATGAGCTCTATCAGGATCTTCCCAGTAGGCAGCTTAAGGCAAGTGTCAAGGTTGTCGATAGAGCTGCTGTTGTTACAGAAAATGCAGAAACCGTGCCCGTGACACCCCCCCCCAGCGGCATTCAAGAAGCCATCGATGCTGAAACTGGTAGGCATCATAAGTGGCCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006040 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009987 GO:0018130 GO:0019438 GO:0030054 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0055044 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko01130 map00520 map01100 map01130

Pfam Domains

Protein Families

PGM_PMM_I PGM_PMM_III PGM_PMM_IV

Protein Analysis

296

Amino Acids

32.78

Weight (kDa)

6.32

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028449)

Species	Orthologous Gene IDs
malus_domestica	MD09G1284100.v1.1
pyrus_communis	pycom09g19210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	104, 546
Acc36I	ACCTGC	1 cut(s)	326
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	664
AciI	CCGC	3 cut(s)	113, 664, 831
AclWI	GGATC	2 cut(s)	603, 738
AfaI	GTAC	2 cut(s)	315, 453
AfiI	CCNNNNNNNGG	2 cut(s)	94, 830
AflII	CTTAAG	1 cut(s)	749
AgsI	TTSAA	4 cut(s)	69, 178, 479, 839
AhdI	GACNNNNNGTC	1 cut(s)	674
AluBI	AGCT	7 cut(s)	118, 184, 329, 609, 721, 748, 779
AluI	AGCT	7 cut(s)	118, 184, 329, 609, 721, 748, 779
Alw21I	GWGCWC	2 cut(s)	640, 723
Alw26I	GTCTC	1 cut(s)	661
Alw44I	GTGCAC	1 cut(s)	636
AlwI	GGATC	2 cut(s)	603, 738
AoxI	GGCC	1 cut(s)	878
ApaLI	GTGCAC	1 cut(s)	636
ApeKI	GCWGC	5 cut(s)	115, 118, 246, 745, 779
Asp700I	GAANNNNTTC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	879
AsuC2I	CCSGG	1 cut(s)	626
BaeGI	GKGCMC	2 cut(s)	640, 813
BanII	GRGCYC	1 cut(s)	723
BarI	GAAGNNNNNNTAC	2 cut(s)	297, 329
Bbv12I	GWGCWC	2 cut(s)	640, 723
BbvI	GCAGC	5 cut(s)	105, 127, 258, 757, 766
BccI	CCATC	5 cut(s)	121, 266, 463, 482, 854
BceAI	ACGGC	1 cut(s)	389
BcgI	CGANNNNNNTGC	2 cut(s)	761, 795
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	1 cut(s)	661
BfaI	CTAG	3 cut(s)	138, 228, 459
BfmI	CTRYAG	1 cut(s)	244
BfrI	CTTAAG	1 cut(s)	749
BfuAI	ACCTGC	1 cut(s)	326
BisI	GCNGC	6 cut(s)	116, 119, 247, 746, 780, 832
BlsI	GCNGC	6 cut(s)	117, 120, 248, 747, 781, 833
Bme1390I	CCNGG	1 cut(s)	626
BmeRI	GACNNNNNGTC	1 cut(s)	674
BmgT120I	GGNCC	1 cut(s)	879
BmiI	GGNNCC	2 cut(s)	623, 630
BmrFI	CCNGG	1 cut(s)	626
BmrI	ACTGGG	2 cut(s)	650, 732
BmsI	GCATC	3 cut(s)	644, 841, 877
BmuI	ACTGGG	2 cut(s)	650, 732
BpuMI	CCSGG	1 cut(s)	626
Bsa29I	ATCGAT	1 cut(s)	849
BsaI	GGTCTC	1 cut(s)	661
BsaJI	CCNNGG	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 830
Bse1I	ACTGG	3 cut(s)	645, 738, 865
BseCI	ATCGAT	1 cut(s)	849
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	5 cut(s)	132, 259, 277, 391, 659
BseLI	CCNNNNNNNGG	2 cut(s)	94, 830
BseNI	ACTGG	3 cut(s)	645, 738, 865
BseSI	GKGCMC	2 cut(s)	640, 813
BseXI	GCAGC	5 cut(s)	105, 127, 258, 757, 766
BseYI	CCCAGC	1 cut(s)	827
BsgI	GTGCAG	2 cut(s)	354, 365
BshFI	GGCC	1 cut(s)	880
BshVI	ATCGAT	1 cut(s)	849
BsiHKAI	GWGCWC	2 cut(s)	640, 723
BsiSI	CCGG	1 cut(s)	625
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	94, 830
BsmAI	GTCTC	1 cut(s)	661
BsmFI	GGGAC	1 cut(s)	506
BsmI	GAATGC	1 cut(s)	834
BsnI	GGCC	1 cut(s)	880
Bso31I	GGTCTC	1 cut(s)	661
Bsp1286I	GDGCHC	3 cut(s)	640, 723, 813
Bsp143I	GATC	3 cut(s)	430, 595, 730
BspACI	CCGC	3 cut(s)	113, 664, 831
BspANI	GGCC	1 cut(s)	880
BspDI	ATCGAT	1 cut(s)	849
BspLI	GGNNCC	2 cut(s)	623, 630
BspMAI	CTGCAG	1 cut(s)	248
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	2 cut(s)	603, 738
BspTI	CTTAAG	1 cut(s)	749
BspTNI	GGTCTC	1 cut(s)	661
BsrBI	CCGCTC	1 cut(s)	664
BsrI	ACTGG	3 cut(s)	645, 738, 865
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	3 cut(s)	430, 595, 730
BssT1I	CCWWGG	1 cut(s)	591
Bst4CI	ACNGT	4 cut(s)	167, 296, 577, 808
BstAFI	CTTAAG	1 cut(s)	749
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	1 cut(s)	536
BstF5I	GGATG	5 cut(s)	132, 259, 277, 391, 659
BstKTI	GATC	3 cut(s)	433, 598, 733
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	3 cut(s)	430, 595, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	606, 851
BstSCI	CCNGG	1 cut(s)	624
BstSFI	CTRYAG	1 cut(s)	244
BstSLI	GKGCMC	2 cut(s)	640, 813
BstV1I	GCAGC	5 cut(s)	105, 127, 258, 757, 766
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
Bsu15I	ATCGAT	1 cut(s)	849
BsuRI	GGCC	1 cut(s)	880
BsuTUI	ATCGAT	1 cut(s)	849
BtsCI	GGATG	5 cut(s)	132, 259, 277, 391, 659
BtsIMutI	CAGTG	3 cut(s)	172, 589, 638
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	879
ClaI	ATCGAT	1 cut(s)	849
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	2 cut(s)	314, 452
CviAII	CATG	3 cut(s)	89, 239, 250
CviQI	GTAC	2 cut(s)	314, 452
DdeI	CTNAG	1 cut(s)	536
DpnI	GATC	3 cut(s)	432, 597, 732
DpnII	GATC	3 cut(s)	430, 595, 730
DriI	GACNNNNNGTC	1 cut(s)	674
Eam1105I	GACNNNNNGTC	1 cut(s)	674
Ecl136II	GAGCTC	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	723
Eco31I	GGTCTC	1 cut(s)	661
Eco53kI	GAGCTC	1 cut(s)	721
EcoICRI	GAGCTC	1 cut(s)	721
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	3 cut(s)	92, 242, 253
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	3 cut(s)	88, 238, 249
Fnu4HI	GCNGC	6 cut(s)	116, 119, 247, 746, 780, 832
FokI	GGATG	5 cut(s)	139, 266, 284, 398, 666
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	6 cut(s)	116, 119, 247, 746, 780, 832
FspBI	CTAG	3 cut(s)	138, 228, 459
GluI	GCNGC	6 cut(s)	116, 119, 247, 746, 780, 832
GsaI	CCCAGC	1 cut(s)	831
HaeIII	GGCC	1 cut(s)	880
HapII	CCGG	1 cut(s)	625
HgaI	GACGC	1 cut(s)	434
Hin1II	CATG	3 cut(s)	92, 242, 253
HinfI	GANTC	2 cut(s)	60, 223
HpaII	CCGG	1 cut(s)	625
Hpy166II	GTNNAC	3 cut(s)	314, 380, 638
Hpy188I	TCNGA	2 cut(s)	163, 690
Hpy188III	TCNNGA	3 cut(s)	459, 728, 839
Hpy8I	GTNNAC	3 cut(s)	314, 380, 638
HpyAV	CCTTC	3 cut(s)	299, 317, 349
HpyCH4III	ACNGT	4 cut(s)	167, 296, 577, 808
HpyCH4V	TGCA	9 cut(s)	4, 55, 121, 154, 246, 335, 346, 638, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	606, 851
HpyF3I	CTNAG	1 cut(s)	536
Hsp92II	CATG	3 cut(s)	92, 242, 253
Kzo9I	GATC	3 cut(s)	430, 595, 730
LmnI	GCTCC	5 cut(s)	77, 326, 367, 621, 628
Lsp1109I	GCAGC	5 cut(s)	105, 127, 258, 757, 766
LweI	GCATC	3 cut(s)	644, 841, 877
MaeI	CTAG	3 cut(s)	138, 228, 459
MaeIII	GTNAC	3 cut(s)	464, 787, 814
MalI	GATC	3 cut(s)	432, 597, 732
MbiI	CCGCTC	1 cut(s)	664
MboI	GATC	3 cut(s)	430, 595, 730
MboII	GAAGA	1 cut(s)	725
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	3 cut(s)	640, 723, 813
MluCI	AATT	2 cut(s)	69, 99
MnlI	CCTC	3 cut(s)	302, 673, 681
MroXI	GAANNNNTTC	1 cut(s)	64
MseI	TTAA	1 cut(s)	750
MspA1I	CMGCKG	2 cut(s)	118, 831
MspCI	CTTAAG	1 cut(s)	749
MspI	CCGG	1 cut(s)	625
MspR9I	CCNGG	1 cut(s)	626
Mva1269I	GAATGC	1 cut(s)	834
MwoI	GCNNNNNNNGC	2 cut(s)	606, 851
NciI	CCSGG	1 cut(s)	626
NdeII	GATC	3 cut(s)	430, 595, 730
NlaIII	CATG	3 cut(s)	92, 242, 253
NlaIV	GGNNCC	2 cut(s)	623, 630
NmuCI	GTSAC	1 cut(s)	814
PctI	GAATGC	1 cut(s)	834
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	60, 223
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	6 cut(s)	117, 120, 248, 747, 781, 833
PsiI	TTATAA	2 cut(s)	104, 546
Psp124BI	GAGCTC	1 cut(s)	723
PspFI	CCCAGC	1 cut(s)	827
PspN4I	GGNNCC	2 cut(s)	623, 630
PspPI	GGNCC	1 cut(s)	879
PsrI	GAACNNNNNNTAC	2 cut(s)	361, 393
PstI	CTGCAG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	730
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	2 cut(s)	315, 453
RsaNI	GTAC	2 cut(s)	314, 452
SacI	GAGCTC	1 cut(s)	723
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	6 cut(s)	116, 119, 247, 746, 780, 832
Sau3AI	GATC	3 cut(s)	430, 595, 730
Sau96I	GGNCC	1 cut(s)	879
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	3 cut(s)	640, 723, 813
SfaNI	GCATC	3 cut(s)	644, 841, 877
SfcI	CTRYAG	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse9I	AATT	2 cut(s)	69, 99
SsiI	CCGC	3 cut(s)	113, 664, 831
SspI	AATATT	1 cut(s)	17
SspMI	CTAG	3 cut(s)	138, 228, 459
SstI	GAGCTC	1 cut(s)	723
StyD4I	CCNGG	1 cut(s)	624
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	4 cut(s)	167, 296, 577, 808
TaqI	TCGA	3 cut(s)	678, 771, 849
TasI	AATT	2 cut(s)	69, 99
TatI	WGTACW	1 cut(s)	313
TauI	GCSGC	1 cut(s)	834
TfiI	GAWTC	2 cut(s)	60, 223
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	3 cut(s)	172, 589, 645
TseFI	GTSAC	1 cut(s)	814
TseI	GCWGC	5 cut(s)	115, 118, 246, 745, 779
Tsp45I	GTSAC	1 cut(s)	814
TspDTI	ATGAA	2 cut(s)	336, 511
TspRI	CASTG	3 cut(s)	172, 589, 645
Van91I	CCANNNNNTGG	1 cut(s)	94
Vha464I	CTTAAG	1 cut(s)	749
VneI	GTGCAC	1 cut(s)	636
XbaI	TCTAGA	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	64
XspI	CTAG	3 cut(s)	138, 228, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.