Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0028449

Physical Location & Seq

Genomic Coordinates Forward (+)

19948705 .. 19950564

Gene Structure 1860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19210.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGTTCGTGCTAGAAATAAGGGTTTGCGAGTATCAGACATTGATTACTTCAAACAGCTATCAAGTTCGTTTAGGTTAGTTAGAGATAGAGGTTTGTTTTATGAGTTCATATGTTCTAAAAAGGAAAAAAAATTCATATTTTGTTTGAGTGGCTTCTATTTGTGTGGTTGGTTAGGTGCTTGCCTGCTTGGTAGATTTGATTCCCAGTGCTTGGTAGATTTGATTCCTGGTGGAAATCATGCCTGCAGCATGGATGACAAGTTGGTTGTGGATGGGGCAAATGGTATTCGGAAATGTGGAAAAGAAGGAGGTGTACTGAATGAAGTAGTTGGTGCAGGTCATGTGCAGGAAGAGAAGGTTGCTCCTTGTAGTTTTGGTTCACAGGATGTTGGGATAAGTTTAGATGATGACACTGATCGGCTTGTATATTTTATTGTACCATCTAGAAGTAGCAACAAGATTGAACTCGTTGATGGGGACAAGATTTTATTCTTTGCTATATTCATCAAGGAGCAACTAAGCATTTTGAATATGGAAGTAGATGTGAATGGAATAACGGTTATCAATGTCAGTATGGTAATCGGGATTTACTTTGAGGCAAATGGCCATGGCACCATCTTGTTCTCAGAACATTACTTATCCTGGCTGGAGGCTAGGACTGCTGAGCTTTCTCTGGTAGCTAAAGGTTCAGAACAGCATAAGGCTGCTTTGAGGCTCTTGGCTGTCAAGGTTGTCGATAGAGCTGCTGTTGTTACAGCAAATGCAGAAACCGTGGCCGTGACACCCCCCAGCATTCAAGAAGCCATCGATGCTGAAACTGGTAGGCATCACAAGTGGCCCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006040 GO:0006047 GO:0006048 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009506 GO:0009987 GO:0018130 GO:0019438 GO:0030054 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046349 GO:0046483 GO:0055044 GO:0055086 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko01130 map00520 map01100 map01130

Pfam Domains

Protein Families

PGM_PMM_I PGM_PMM_III PGM_PMM_IV

Protein Analysis

282

Amino Acids

30.96

Weight (kDa)

6.18

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028449)

Species	Orthologous Gene IDs
malus_domestica	MD09G1284100.v1.1
pyrus_communis	pycom09g19210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	611
AccB7I	CCANNNNNTGG	1 cut(s)	211
AcoI	YGGCCR	2 cut(s)	604, 774
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	2 cut(s)	315, 438
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	4 cut(s)	52, 464, 529, 797
AjnI	CCWGG	2 cut(s)	226, 641
AluBI	AGCT	4 cut(s)	58, 667, 680, 743
AluI	AGCT	4 cut(s)	58, 667, 680, 743
AoxI	GGCC	3 cut(s)	604, 774, 836
ApeKI	GCWGC	3 cut(s)	246, 704, 743
ApoI	RAATTY	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	837
BalI	TGGCCA	1 cut(s)	606
BanI	GGYRCC	1 cut(s)	611
BarI	GAAGNNNNNNTAC	2 cut(s)	297, 329
BbvI	GCAGC	3 cut(s)	258, 691, 730
BccI	CCATC	5 cut(s)	266, 448, 467, 623, 812
BceAI	ACGGC	1 cut(s)	761
BcgI	CGANNNNNNTGC	2 cut(s)	725, 759
BciT130I	CCWGG	2 cut(s)	228, 643
BfaI	CTAG	3 cut(s)	12, 444, 654
BfmI	CTRYAG	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	326
BisI	GCNGC	3 cut(s)	247, 705, 744
BlpI	GCTNAGC	1 cut(s)	663
BlsI	GCNGC	3 cut(s)	248, 706, 745
Bme1390I	CCNGG	2 cut(s)	228, 643
BmgT120I	GGNCC	1 cut(s)	837
BmiI	GGNNCC	2 cut(s)	613, 839
BmrFI	CCNGG	2 cut(s)	228, 643
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	2 cut(s)	799, 835
BmuI	ACTGGG	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	668
Bpu1102I	GCTNAGC	1 cut(s)	663
Bsa29I	ATCGAT	1 cut(s)	807
BsaJI	CCNNGG	2 cut(s)	607, 771
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	205, 823
BseBI	CCWGG	2 cut(s)	228, 643
BseCI	ATCGAT	1 cut(s)	807
BseDI	CCNNGG	2 cut(s)	607, 771
BseGI	GGATG	3 cut(s)	259, 277, 391
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	639, 654
BseNI	ACTGG	2 cut(s)	205, 823
BseXI	GCAGC	3 cut(s)	258, 691, 730
BseYI	CCCAGC	1 cut(s)	788
BsgI	GTGCAG	2 cut(s)	354, 365
BshFI	GGCC	3 cut(s)	606, 776, 838
BshNI	GGYRCC	1 cut(s)	611
BshVI	ATCGAT	1 cut(s)	807
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	491
BsmI	GAATGC	1 cut(s)	792
BsnI	GGCC	3 cut(s)	606, 776, 838
Bsp143I	GATC	1 cut(s)	415
Bsp1720I	GCTNAGC	1 cut(s)	663
Bsp19I	CCATGG	1 cut(s)	607
BspANI	GGCC	3 cut(s)	606, 776, 838
BspCNI	CTCAG	2 cut(s)	638, 655
BspDI	ATCGAT	1 cut(s)	807
BspLI	GGNNCC	2 cut(s)	613, 839
BspMAI	CTGCAG	1 cut(s)	248
BspMI	ACCTGC	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	611
BsrI	ACTGG	2 cut(s)	205, 823
BssECI	CCNNGG	2 cut(s)	607, 771
BssMI	GATC	1 cut(s)	415
BssT1I	CCWWGG	1 cut(s)	607
Bst2UI	CCWGG	2 cut(s)	228, 643
Bst4CI	ACNGT	2 cut(s)	559, 772
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	3 cut(s)	181, 185, 244
BstDEI	CTNAG	3 cut(s)	518, 625, 663
BstDSI	CCRYGG	2 cut(s)	607, 771
BstF5I	GGATG	3 cut(s)	259, 277, 391
BstKTI	GATC	1 cut(s)	418
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	2 cut(s)	659, 809
BstNI	CCWGG	2 cut(s)	228, 643
BstSCI	CCNGG	2 cut(s)	226, 641
BstSFI	CTRYAG	1 cut(s)	244
BstV1I	GCAGC	3 cut(s)	258, 691, 730
Bsu15I	ATCGAT	1 cut(s)	807
BsuRI	GGCC	3 cut(s)	606, 776, 838
BsuTUI	ATCGAT	1 cut(s)	807
BtgI	CCRYGG	2 cut(s)	607, 771
BtsCI	GGATG	3 cut(s)	259, 277, 391
BtsIMutI	CAGTG	2 cut(s)	212, 411
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	3 cut(s)	181, 185, 244
Cfr13I	GGNCC	1 cut(s)	837
ClaI	ATCGAT	1 cut(s)	807
Csp6I	GTAC	2 cut(s)	314, 437
CviAII	CATG	4 cut(s)	239, 250, 341, 608
CviQI	GTAC	2 cut(s)	314, 437
DdeI	CTNAG	3 cut(s)	518, 625, 663
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
EaeI	YGGCCR	2 cut(s)	604, 774
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	607
EcoRII	CCWGG	2 cut(s)	226, 641
EcoT14I	CCWWGG	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	4 cut(s)	242, 253, 344, 611
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	4 cut(s)	238, 249, 340, 607
FauNDI	CATATG	1 cut(s)	110
Fnu4HI	GCNGC	3 cut(s)	247, 705, 744
FokI	GGATG	3 cut(s)	266, 284, 398
Fsp4HI	GCNGC	3 cut(s)	247, 705, 744
FspBI	CTAG	3 cut(s)	12, 444, 654
GluI	GCNGC	3 cut(s)	247, 705, 744
GsaI	CCCAGC	1 cut(s)	792
GsuI	CTGGAG	1 cut(s)	668
HaeIII	GGCC	3 cut(s)	606, 776, 838
Hin1II	CATG	4 cut(s)	242, 253, 344, 611
HinfI	GANTC	2 cut(s)	200, 223
Hpy166II	GTNNAC	2 cut(s)	314, 380
Hpy188I	TCNGA	4 cut(s)	37, 291, 628, 691
Hpy188III	TCNNGA	3 cut(s)	444, 583, 797
Hpy8I	GTNNAC	2 cut(s)	314, 380
HpyAV	CCTTC	2 cut(s)	299, 349
HpyCH4III	ACNGT	2 cut(s)	559, 772
HpyCH4V	TGCA	4 cut(s)	246, 335, 346, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	659, 809
HpyF3I	CTNAG	3 cut(s)	518, 625, 663
Hsp92II	CATG	4 cut(s)	242, 253, 344, 611
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	2 cut(s)	367, 511
Lsp1109I	GCAGC	3 cut(s)	258, 691, 730
LweI	GCATC	2 cut(s)	799, 835
MaeI	CTAG	3 cut(s)	12, 444, 654
MaeIII	GTNAC	2 cut(s)	751, 778
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	1 cut(s)	362
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	1 cut(s)	131
MluNI	TGGCCA	1 cut(s)	606
MnlI	CCTC	5 cut(s)	83, 302, 589, 643, 705
Mox20I	TGGCCA	1 cut(s)	606
MscI	TGGCCA	1 cut(s)	606
Msp20I	TGGCCA	1 cut(s)	606
MspR9I	CCNGG	2 cut(s)	228, 643
Mva1269I	GAATGC	1 cut(s)	792
MvaI	CCWGG	2 cut(s)	228, 643
MwoI	GCNNNNNNNGC	2 cut(s)	659, 809
NcoI	CCATGG	1 cut(s)	607
NdeI	CATATG	1 cut(s)	110
NdeII	GATC	1 cut(s)	415
NlaIII	CATG	4 cut(s)	242, 253, 344, 611
NlaIV	GGNNCC	2 cut(s)	613, 839
NmuCI	GTSAC	1 cut(s)	778
PctI	GAATGC	1 cut(s)	792
PfeI	GAWTC	2 cut(s)	200, 223
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	248, 706, 745
Psp6I	CCWGG	2 cut(s)	226, 641
PspFI	CCCAGC	1 cut(s)	788
PspGI	CCWGG	2 cut(s)	226, 641
PspN4I	GGNNCC	2 cut(s)	613, 839
PspPI	GGNCC	1 cut(s)	837
PsrI	GAACNNNNNNTAC	2 cut(s)	361, 393
PstI	CTGCAG	1 cut(s)	248
RsaI	GTAC	2 cut(s)	315, 438
RsaNI	GTAC	2 cut(s)	314, 437
SatI	GCNGC	3 cut(s)	247, 705, 744
Sau3AI	GATC	1 cut(s)	415
Sau96I	GGNCC	1 cut(s)	837
ScrFI	CCNGG	2 cut(s)	228, 643
SfaNI	GCATC	2 cut(s)	799, 835
SfcI	CTRYAG	1 cut(s)	244
Sse9I	AATT	1 cut(s)	131
SspMI	CTAG	3 cut(s)	12, 444, 654
StyD4I	CCNGG	2 cut(s)	226, 641
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	2 cut(s)	559, 772
TaqI	TCGA	2 cut(s)	735, 807
TasI	AATT	1 cut(s)	131
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	2 cut(s)	200, 223
TscAI	CASTG	2 cut(s)	212, 418
TseFI	GTSAC	1 cut(s)	778
TseI	GCWGC	3 cut(s)	246, 704, 743
Tsp45I	GTSAC	1 cut(s)	778
TspDTI	ATGAA	4 cut(s)	97, 124, 336, 493
TspRI	CASTG	2 cut(s)	212, 418
Van91I	CCANNNNNTGG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	131
XbaI	TCTAGA	1 cut(s)	443
XspI	CTAG	3 cut(s)	12, 444, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.