MD09G1288900.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0014645
Physical Location & Seq
Forward (+)
37000618 .. 37001195
578 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1288900.v1.1.491

Sequence Viewer

Length: 330 bp
ATGGACGTGAATGTTTTTCCAACGCTTGTGTGTGGGTGGACTTGGGAGGAGAACAAGTTGTTCGAGCTGGCTTTGGCGGTGGTTGACGAAGAAGATCCGCAGCGCTGGGACGTAGTTGCATCCTTGGTCGGAGGGAGAAAGAGTGCAGAGGATGTCCAGAAACATTATGTCATTCTTTTGGAGGATTTGCAGGTCATAGAATCTGGTAAATTGGATCACAAACTCGGACAGCAGCCGCAGCAGAATTATGTTCAAGTGGATCATTGTACTCAATCCGTATGCTGGACTGACGAAACTAACAATTTGCTGGTTCGGTTGGACTTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

110

Amino Acids

12.51

Weight (kDa)

4.39

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding_2 PF23082 13 - 56 3e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014645)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26340
malus_domestica MD09G1288900.v1.1 MD09G1292300.v1.1 MD17G1283900.v1.1
prunus_persica Prupe.3G003600_v2.0.a1
pyrus_communis pycom17g27980
rosa_chinensis RchiOBHm_Chr3g0486111
rosa_laevigata RLG00000023102
rosa_multiflora Rmu_co8404843.1_g000001 Rmu_sc0006736.1_g000029 Rmu_sc0024469.1_g000002
rosa_roxburghii Rroxscaffold_6G00396040
rosa_rugosa Rorug03G0223600
rosa_samantha Rh3AG273300 Rh3BG308400 Rh3DG302900
rosa_wichuraiana Rw3G024230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 181
AciI CCGC 3 cut(s) 77, 98, 236
AclWI GGATC 3 cut(s) 89, 222, 267
AfaI GTAC 1 cut(s) 268
AfeI AGCGCT 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 2 cut(s) 254, 325
AjiI CACGTC 1 cut(s) 7
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
AlwI GGATC 3 cut(s) 89, 222, 267
Aor51HI AGCGCT 1 cut(s) 104
ApeKI GCWGC 3 cut(s) 100, 232, 238
AspLEI GCGC 1 cut(s) 105
BbvI GCAGC 3 cut(s) 112, 244, 250
BfoI RGCGCY 1 cut(s) 106
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 4 cut(s) 101, 233, 236, 239
BlsI GCNGC 4 cut(s) 102, 234, 237, 240
BmgBI CACGTC 1 cut(s) 7
BmsI GCATC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 123
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 127, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 119, 157
BseLI CCNNNNNNNGG 1 cut(s) 282
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 3 cut(s) 112, 244, 250
BseYI CCCAGC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 122
Bsp143I GATC 3 cut(s) 94, 214, 259
BspACI CCGC 3 cut(s) 77, 98, 236
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 3 cut(s) 89, 222, 267
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 3 cut(s) 94, 214, 259
BssT1I CCWWGG 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 69
BstF5I GGATG 2 cut(s) 119, 157
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 3 cut(s) 97, 217, 262
BstMBI GATC 3 cut(s) 94, 214, 259
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstV1I GCAGC 3 cut(s) 112, 244, 250
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 2 cut(s) 119, 157
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 267
CviJI RGCY 3 cut(s) 67, 71, 235
CviKI_1 RGCY 3 cut(s) 67, 71, 235
CviQI GTAC 1 cut(s) 267
DpnI GATC 3 cut(s) 96, 216, 261
DpnII GATC 3 cut(s) 94, 214, 259
Eco130I CCWWGG 1 cut(s) 123
Eco47III AGCGCT 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaiI YATR 4 cut(s) 168, 197, 249, 280
FaqI GGGAC 1 cut(s) 122
Fnu4HI GCNGC 4 cut(s) 101, 233, 236, 239
FokI GGATG 2 cut(s) 106, 164
Fsp4HI GCNGC 4 cut(s) 101, 233, 236, 239
GlaI GCGC 1 cut(s) 104
GluI GCNGC 4 cut(s) 101, 233, 236, 239
GsaI CCCAGC 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 106
HhaI GCGC 1 cut(s) 105
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 39, 85
Hpy188I TCNGA 2 cut(s) 131, 227
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 2 cut(s) 39, 85
HpyCH4IV ACGT 2 cut(s) 6, 111
HpyCH4V TGCA 3 cut(s) 119, 146, 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpySE526I ACGT 2 cut(s) 6, 111
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 3 cut(s) 94, 214, 259
LpnPI CCDG 7 cut(s) 53, 91, 170, 176, 189, 268, 293
Lsp1109I GCAGC 3 cut(s) 112, 244, 250
LweI GCATC 1 cut(s) 128
MaeII ACGT 2 cut(s) 6, 111
MalI GATC 3 cut(s) 96, 216, 261
MboI GATC 3 cut(s) 94, 214, 259
MboII GAAGA 2 cut(s) 101, 104
MflI RGATCY 1 cut(s) 94
MluCI AATT 4 cut(s) 209, 244, 301, 325
MmeI TCCRAC 3 cut(s) 44, 109, 297
MnlI CCTC 4 cut(s) 40, 125, 142, 175
MseI TTAA 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 238
NdeII GATC 3 cut(s) 94, 214, 259
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 4 cut(s) 102, 234, 237, 240
PspFI CCCAGC 1 cut(s) 105
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 328
SatI GCNGC 4 cut(s) 101, 233, 236, 239
Sau3AI GATC 3 cut(s) 94, 214, 259
SetI ASST 4 cut(s) 9, 69, 114, 195
SfaNI GCATC 1 cut(s) 128
Sse9I AATT 4 cut(s) 209, 244, 301, 325
SsiI CCGC 3 cut(s) 77, 98, 236
StyI CCWWGG 1 cut(s) 123
TaiI ACGT 2 cut(s) 9, 114
TaqI TCGA 1 cut(s) 63
TasI AATT 4 cut(s) 209, 244, 301, 325
TatI WGTACW 1 cut(s) 266
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 328
Tru9I TTAA 1 cut(s) 328
TseI GCWGC 3 cut(s) 100, 232, 238
TspGWI ACGGA 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.