SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g26340 |
| malus_domestica | MD09G1288900.v1.1 MD09G1292300.v1.1 MD17G1283900.v1.1 |
| prunus_persica | Prupe.3G003600_v2.0.a1 |
| pyrus_communis | pycom17g27980 |
| rosa_chinensis | RchiOBHm_Chr3g0486111 |
| rosa_laevigata | RLG00000023102 |
| rosa_multiflora | Rmu_co8404843.1_g000001 Rmu_sc0006736.1_g000029 Rmu_sc0024469.1_g000002 |
| rosa_roxburghii | Rroxscaffold_6G00396040 |
| rosa_rugosa | Rorug03G0223600 |
| rosa_samantha | Rh3AG273300 Rh3BG308400 Rh3DG302900 |
| rosa_wichuraiana | Rw3G024230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 190 |
| AciI | CCGC | 1 cut(s) | 242 |
| AclWI | GGATC | 3 cut(s) | 175, 231, 273 |
| AfaI | GTAC | 1 cut(s) | 165 |
| AfeI | AGCGCT | 1 cut(s) | 113 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 190, 288 |
| AgsI | TTSAA | 1 cut(s) | 257 |
| AluBI | AGCT | 1 cut(s) | 76 |
| AluI | AGCT | 1 cut(s) | 76 |
| AlwI | GGATC | 3 cut(s) | 175, 231, 273 |
| Aor51HI | AGCGCT | 1 cut(s) | 113 |
| AoxI | GGCC | 1 cut(s) | 325 |
| ApeKI | GCWGC | 1 cut(s) | 128 |
| AspLEI | GCGC | 2 cut(s) | 114, 155 |
| AspS9I | GGNCC | 1 cut(s) | 325 |
| BbsI | GAAGAC | 1 cut(s) | 108 |
| BbvI | GCAGC | 1 cut(s) | 140 |
| BccI | CCATC | 1 cut(s) | 39 |
| BfoI | RGCGCY | 1 cut(s) | 115 |
| BfuAI | ACCTGC | 1 cut(s) | 190 |
| BisI | GCNGC | 2 cut(s) | 129, 242 |
| BlsI | GCNGC | 2 cut(s) | 130, 243 |
| BmgT120I | GGNCC | 1 cut(s) | 325 |
| BmrI | ACTGGG | 1 cut(s) | 242 |
| BmuI | ACTGGG | 1 cut(s) | 242 |
| BpiI | GAAGAC | 1 cut(s) | 108 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 50, 80 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 190, 288 |
| Bse1I | ACTGG | 1 cut(s) | 237 |
| Bse3DI | GCAATG | 1 cut(s) | 268 |
| BseGI | GGATG | 2 cut(s) | 50, 166 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 190, 288 |
| BseMI | GCAATG | 1 cut(s) | 268 |
| BseNI | ACTGG | 1 cut(s) | 237 |
| BseRI | GAGGAG | 1 cut(s) | 71 |
| BseXI | GCAGC | 1 cut(s) | 140 |
| BseYI | CCCAGC | 1 cut(s) | 114 |
| BshFI | GGCC | 1 cut(s) | 327 |
| BslFI | GGGAC | 1 cut(s) | 249 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 190, 288 |
| BsmFI | GGGAC | 1 cut(s) | 249 |
| BsnI | GGCC | 1 cut(s) | 327 |
| Bsp1407I | TGTACA | 1 cut(s) | 163 |
| Bsp143I | GATC | 3 cut(s) | 180, 223, 265 |
| BspACI | CCGC | 1 cut(s) | 242 |
| BspANI | GGCC | 1 cut(s) | 327 |
| BspMI | ACCTGC | 1 cut(s) | 190 |
| BspPI | GGATC | 3 cut(s) | 175, 231, 273 |
| BsrDI | GCAATG | 1 cut(s) | 268 |
| BsrGI | TGTACA | 1 cut(s) | 163 |
| BsrI | ACTGG | 1 cut(s) | 237 |
| BssMI | GATC | 3 cut(s) | 180, 223, 265 |
| BstAUI | TGTACA | 1 cut(s) | 163 |
| BstC8I | GCNNGC | 1 cut(s) | 78 |
| BstDEI | CTNAG | 1 cut(s) | 30 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 188 |
| BstF5I | GGATG | 2 cut(s) | 50, 166 |
| BstH2I | RGCGCY | 1 cut(s) | 115 |
| BstHHI | GCGC | 2 cut(s) | 114, 155 |
| BstKTI | GATC | 3 cut(s) | 183, 226, 268 |
| BstMBI | GATC | 3 cut(s) | 180, 223, 265 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 150 |
| BstV1I | GCAGC | 1 cut(s) | 140 |
| BstV2I | GAAGAC | 1 cut(s) | 108 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 114 |
| BsuRI | GGCC | 1 cut(s) | 327 |
| BtsCI | GGATG | 2 cut(s) | 50, 166 |
| BveI | ACCTGC | 1 cut(s) | 190 |
| Cac8I | GCNNGC | 1 cut(s) | 78 |
| CfoI | GCGC | 2 cut(s) | 114, 155 |
| Cfr13I | GGNCC | 1 cut(s) | 325 |
| Csp6I | GTAC | 1 cut(s) | 164 |
| CviAII | CATG | 1 cut(s) | 16 |
| CviJI | RGCY | 6 cut(s) | 76, 80, 86, 131, 241, 327 |
| CviKI_1 | RGCY | 6 cut(s) | 76, 80, 86, 131, 241, 327 |
| CviQI | GTAC | 1 cut(s) | 164 |
| DdeI | CTNAG | 1 cut(s) | 30 |
| DpnI | GATC | 3 cut(s) | 182, 225, 267 |
| DpnII | GATC | 3 cut(s) | 180, 223, 265 |
| Eco47III | AGCGCT | 1 cut(s) | 113 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 188 |
| FaeI | CATG | 1 cut(s) | 19 |
| FaiI | YATR | 4 cut(s) | 17, 177, 206, 252 |
| FaqI | GGGAC | 1 cut(s) | 249 |
| FatI | CATG | 1 cut(s) | 15 |
| Fnu4HI | GCNGC | 2 cut(s) | 129, 242 |
| FokI | GGATG | 2 cut(s) | 57, 173 |
| Fsp4HI | GCNGC | 2 cut(s) | 129, 242 |
| GlaI | GCGC | 2 cut(s) | 113, 154 |
| GluI | GCNGC | 2 cut(s) | 129, 242 |
| GsaI | CCCAGC | 1 cut(s) | 118 |
| HaeII | RGCGCY | 1 cut(s) | 115 |
| HaeIII | GGCC | 1 cut(s) | 327 |
| HhaI | GCGC | 2 cut(s) | 114, 155 |
| Hin1II | CATG | 1 cut(s) | 19 |
| Hin6I | GCGC | 2 cut(s) | 112, 153 |
| HinP1I | GCGC | 2 cut(s) | 112, 153 |
| HinfI | GANTC | 1 cut(s) | 209 |
| Hpy166II | GTNNAC | 1 cut(s) | 13 |
| Hpy8I | GTNNAC | 1 cut(s) | 13 |
| HpyCH4V | TGCA | 3 cut(s) | 128, 199, 273 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 150 |
| HpyF3I | CTNAG | 1 cut(s) | 30 |
| Hsp92II | CATG | 1 cut(s) | 19 |
| HspAI | GCGC | 2 cut(s) | 112, 153 |
| Kzo9I | GATC | 3 cut(s) | 180, 223, 265 |
| LpnPI | CCDG | 8 cut(s) | 62, 100, 146, 185, 198, 218, 274, 299 |
| Lsp1109I | GCAGC | 1 cut(s) | 140 |
| MalI | GATC | 3 cut(s) | 182, 225, 267 |
| MboI | GATC | 3 cut(s) | 180, 223, 265 |
| MboII | GAAGA | 1 cut(s) | 113 |
| MluCI | AATT | 4 cut(s) | 218, 247, 307, 331 |
| MnlI | CCTC | 5 cut(s) | 49, 91, 134, 151, 184 |
| MseI | TTAA | 1 cut(s) | 334 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 150 |
| NdeII | GATC | 3 cut(s) | 180, 223, 265 |
| NlaIII | CATG | 1 cut(s) | 19 |
| PfeI | GAWTC | 1 cut(s) | 209 |
| PkrI | GCNGC | 2 cut(s) | 130, 243 |
| PspFI | CCCAGC | 1 cut(s) | 114 |
| PspPI | GGNCC | 1 cut(s) | 325 |
| RsaI | GTAC | 1 cut(s) | 165 |
| RsaNI | GTAC | 1 cut(s) | 164 |
| SaqAI | TTAA | 1 cut(s) | 334 |
| SatI | GCNGC | 2 cut(s) | 129, 242 |
| Sau3AI | GATC | 3 cut(s) | 180, 223, 265 |
| Sau96I | GGNCC | 1 cut(s) | 325 |
| SetI | ASST | 2 cut(s) | 78, 204 |
| Sse9I | AATT | 4 cut(s) | 218, 247, 307, 331 |
| SsiI | CCGC | 1 cut(s) | 242 |
| TasI | AATT | 4 cut(s) | 218, 247, 307, 331 |
| TatI | WGTACW | 1 cut(s) | 163 |
| TauI | GCSGC | 1 cut(s) | 244 |
| TfiI | GAWTC | 1 cut(s) | 209 |
| Tru1I | TTAA | 1 cut(s) | 334 |
| Tru9I | TTAA | 1 cut(s) | 334 |
| TseI | GCWGC | 1 cut(s) | 128 |
| TspDTI | ATGAA | 1 cut(s) | 32 |
| TspGWI | ACGGA | 1 cut(s) | 271 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 188 |