Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0028163

Physical Location & Seq

Genomic Coordinates Reverse (-)

2609098 .. 2609781

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1021200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGTTCCTGCTTACTCGAGCACTTTAAGGCTCAGCCTTTATGGGTTCTTGTGCTCTTCACTCTCGACTCTTTCTCTCTCTCTCTCTCTCTCTCTATCTTTTTCTCTCTCTCTCTATCTTTTTTTTCTCTCTCTCTATCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCAATGGGTCTACGTCAATTTCCTCAAACCTGCCAAGAATCTCAAAAAGTACGGATCTTGGGCACTCGTCACCGGACCCACAGATGGCATTGGCAAGGCCTTCGCCTTCCAATTGGCTCGGAATGGGCTAAATCTGATCTTGGTAGGTTGGAATTCGGACAAACTCAAGGACGTCTCGGACGCTGTCCTGGCCAAGTACGGCAAAACCCAGATCAAGACTATCGTGGTCGACTTCACCGGCAACCTTGACGACGGCGTCAGGCACATTCTGGAGAAGATTAAAGGGTTGTATGTGGGACTTTTGATTAACATCGTTGGGATTTTGTACCCGTATGCTCGGTTCTTTCATGAGGTGGATTCGAAGCTACTGAGGAACTTGATTAAAAGCCGGTTTTTCAAAGTTGGGTTTTGCAGCTTCGTGTTTTTGGGTTTTTTTTTTTCACTCAAAACTGTGAAAAAAAAGCTAAAGTTGAATGTTTATCAAACACAAAAAAGCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000038 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0018454 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045703 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212

Pfam Domains

Protein Families

adh_short

Protein Analysis

228

Amino Acids

25.54

Weight (kDa)

9.86

Isoelectric Point (pI)

11.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	81 - 193	1.6e-11	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0028163)

Species	Orthologous Gene IDs
malus_domestica	MD10G1021200.v1.1
pyrus_communis	pycom17g12350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AatII	GACGTC	1 cut(s)	357
Acc36I	ACCTGC	1 cut(s)	220
AccI	GTMKAC	2 cut(s)	192, 411
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	334
AcyI	GRCGYC	2 cut(s)	354, 438
AfaI	GTAC	3 cut(s)	233, 380, 509
AfiI	CCNNNNNNNGG	2 cut(s)	187, 266
AgsI	TTSAA	2 cut(s)	580, 655
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	4 cut(s)	547, 597, 646, 678
AluI	AGCT	4 cut(s)	547, 597, 646, 678
Alw21I	GWGCWC	2 cut(s)	24, 57
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	244
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	2 cut(s)	279, 372
ApeKI	GCWGC	1 cut(s)	594
ApoI	RAATTY	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	244, 409
AsuII	TTCGAA	1 cut(s)	542
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	247
BalI	TGGCCA	1 cut(s)	374
Bbv12I	GWGCWC	2 cut(s)	24, 57
BbvI	GCAGC	1 cut(s)	606
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	2 cut(s)	397, 451
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	361
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	595
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	596
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	7, 259
BmrFI	CCNGG	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	473
Bpu1102I	GCTNAGC	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	491
BsaHI	GRCGYC	2 cut(s)	354, 438
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 266
Bse118I	RCCGGY	2 cut(s)	419, 570
Bse8I	GATNNNNATC	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	371
BseJI	GATNNNNATC	1 cut(s)	491
BseLI	CCNNNNNNNGG	2 cut(s)	187, 266
BseMII	CTCAG	2 cut(s)	47, 542
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	606
BshFI	GGCC	2 cut(s)	281, 374
BsiHKAI	GWGCWC	2 cut(s)	24, 57
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	255, 420, 571
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	2 cut(s)	187, 266
BsmAI	GTCTC	1 cut(s)	361
BsmBI	CGTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	492
BsnI	GGCC	2 cut(s)	281, 374
BsoBI	CYCGRG	1 cut(s)	17
Bsp119I	TTCGAA	1 cut(s)	542
Bsp1286I	GDGCHC	3 cut(s)	24, 57, 247
Bsp143I	GATC	3 cut(s)	236, 318, 393
Bsp1720I	GCTNAGC	1 cut(s)	33
BspANI	GGCC	2 cut(s)	281, 374
BspCNI	CTCAG	2 cut(s)	46, 543
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	2 cut(s)	7, 259
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	542
BsrFI	RCCGGY	2 cut(s)	419, 570
BssAI	RCCGGY	2 cut(s)	419, 570
BssMI	GATC	3 cut(s)	236, 318, 393
BssNI	GRCGYC	2 cut(s)	354, 438
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	634
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	2 cut(s)	354, 438
BstBI	TTCGAA	1 cut(s)	542
BstDEI	CTNAG	2 cut(s)	33, 551
BstKTI	GATC	3 cut(s)	239, 321, 396
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	3 cut(s)	236, 318, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	606
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	281, 374
BveI	ACCTGC	1 cut(s)	220
CciI	TCATGA	1 cut(s)	529
Cfr10I	RCCGGY	2 cut(s)	419, 570
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	2 cut(s)	371, 427
Csp6I	GTAC	3 cut(s)	232, 379, 508
CviAII	CATG	1 cut(s)	530
CviQI	GTAC	3 cut(s)	232, 379, 508
DdeI	CTNAG	2 cut(s)	33, 551
DpnI	GATC	3 cut(s)	238, 320, 395
DpnII	GATC	3 cut(s)	236, 318, 393
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco147I	AGGCCT	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	17
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	369
Esp3I	CGTCTC	1 cut(s)	361
FaeI	CATG	1 cut(s)	533
FaiI	YATR	4 cut(s)	43, 474, 516, 531
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	1 cut(s)	529
FblI	GTMKAC	2 cut(s)	192, 411
Fnu4HI	GCNGC	1 cut(s)	595
Fsp4HI	GCNGC	1 cut(s)	595
GluI	GCNGC	1 cut(s)	595
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	281, 374
HapII	CCGG	3 cut(s)	255, 420, 571
HgaI	GACGC	2 cut(s)	371, 427
Hin1I	GRCGYC	2 cut(s)	354, 438
Hin1II	CATG	1 cut(s)	533
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	68, 220, 539
HpaII	CCGG	3 cut(s)	255, 420, 571
HphI	GGTGA	2 cut(s)	244, 409
Hpy166II	GTNNAC	2 cut(s)	193, 412
Hpy188I	TCNGA	4 cut(s)	303, 318, 340, 361
Hpy188III	TCNNGA	4 cut(s)	65, 397, 452, 530
Hpy8I	GTNNAC	2 cut(s)	193, 412
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	2 cut(s)	292, 298
HpyCH4III	ACNGT	1 cut(s)	634
HpyCH4IV	ACGT	2 cut(s)	195, 354
HpyCH4V	TGCA	1 cut(s)	594
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	2 cut(s)	33, 551
HpySE526I	ACGT	2 cut(s)	195, 354
Hsp92I	GRCGYC	2 cut(s)	354, 438
Hsp92II	CATG	1 cut(s)	533
Kzo9I	GATC	3 cut(s)	236, 318, 393
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	1 cut(s)	683
Lsp1109I	GCAGC	1 cut(s)	606
MaeII	ACGT	2 cut(s)	195, 354
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	3 cut(s)	238, 320, 395
MboI	GATC	3 cut(s)	236, 318, 393
MboII	GAAGA	2 cut(s)	49, 469
MfeI	CAATTG	1 cut(s)	293
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	3 cut(s)	24, 57, 247
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	3 cut(s)	199, 293, 334
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	4 cut(s)	191, 215, 526, 546
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	4 cut(s)	27, 462, 489, 564
Msp20I	TGGCCA	1 cut(s)	374
MspI	CCGG	3 cut(s)	255, 420, 571
MspR9I	CCNGG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	371
NdeII	GATC	3 cut(s)	236, 318, 393
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	2 cut(s)	7, 259
NmuCI	GTSAC	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	542
PaeR7I	CTCGAG	1 cut(s)	17
PagI	TCATGA	1 cut(s)	529
PceI	AGGCCT	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	220, 539
PflFI	GACNNNGTC	2 cut(s)	365, 437
PkrI	GCNGC	1 cut(s)	596
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	7, 259
PspPI	GGNCC	1 cut(s)	257
PspXI	VCTCGAGB	1 cut(s)	17
PsrI	GAACNNNNNNTAC	2 cut(s)	506, 538
PsuI	RGATCY	1 cut(s)	236
PsyI	GACNNNGTC	2 cut(s)	365, 437
RsaI	GTAC	3 cut(s)	233, 380, 509
RsaNI	GTAC	3 cut(s)	232, 379, 508
SalI	GTCGAC	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	4 cut(s)	27, 462, 489, 564
SatI	GCNGC	1 cut(s)	595
Sau3AI	GATC	3 cut(s)	236, 318, 393
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	3 cut(s)	24, 57, 247
Sfr274I	CTCGAG	1 cut(s)	17
SfuI	TTCGAA	1 cut(s)	542
SinI	GGWCC	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	17, 347
SmoI	CTYRAG	2 cut(s)	17, 347
Sse9I	AATT	3 cut(s)	199, 293, 334
SseBI	AGGCCT	1 cut(s)	281
StuI	AGGCCT	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	634
TaiI	ACGT	2 cut(s)	198, 357
TaqI	TCGA	4 cut(s)	18, 66, 411, 542
TasI	AATT	3 cut(s)	199, 293, 334
TfiI	GAWTC	2 cut(s)	220, 539
Tru1I	TTAA	4 cut(s)	27, 462, 489, 564
Tru9I	TTAA	4 cut(s)	27, 462, 489, 564
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	594
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	518
TspGWI	ACGGA	1 cut(s)	249
Tth111I	GACNNNGTC	2 cut(s)	365, 437
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	334
XhoI	CTCGAG	1 cut(s)	17
XmiI	GTMKAC	2 cut(s)	192, 411
ZraI	GACGTC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.