Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0028163

Physical Location & Seq

Genomic Coordinates Forward (+)

10025142 .. 10025700

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g12350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGTTCCTGTTTACTCGAGCATCTCAAGGCTCAGCCTTTTTGGGTTCTTGTACCTGCCACGAATCTCAAAAAGTACGGATCTTGGGCACTCGTCACCGGACCCATCGATGGCATTGGCAAGGCCTTCGCCTTCCAATTGGCTCGGAAGGGGCTTAATATGATCTTGGTAGGTAGGAATCCGGACAAACTCAAGGACGTCTCGGACACTGTCATGGCCAAGTACAACAAAACCCAAATCAAGACCGTTGTGGTCGACTTCACCGGCGACCTTAACGACGACGTTAGTCACATTTGGGAGACTATTGAAGGGTTGGATGTGGGACTTTTGATTAACAAAATTGGGATTTTGTACCTGTATGCTCGGTTCTTTCATGAGGTGGATTCGGAGTTATTGAGAAACTTGATTAAAAGCCAGTTTTTCAAAGCTAGGTTTTGCAGCTTCTTGTTTTTGGCTTTTTTTCACCCAAAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000038 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0018454 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045703 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212

Pfam Domains

Protein Families

adh_short

Protein Analysis

159

Amino Acids

17.93

Weight (kDa)

9.08

Isoelectric Point (pI)

18.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028163)

Species	Orthologous Gene IDs
malus_domestica	MD10G1021200.v1.1
pyrus_communis	pycom17g12350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	255
AccIII	TCCGGA	1 cut(s)	181
AclWI	GGATC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	4 cut(s)	54, 77, 224, 353
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	308, 424
AluBI	AGCT	2 cut(s)	428, 441
AluI	AGCT	2 cut(s)	428, 441
Alw26I	GTCTC	2 cut(s)	205, 293
AlwI	GGATC	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	17
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	2 cut(s)	123, 216
ApeKI	GCWGC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	88, 253, 455
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	450
BccI	CCATC	2 cut(s)	104, 113
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BcoDI	GTCTC	2 cut(s)	205, 293
BfaI	CTAG	1 cut(s)	429
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	1 cut(s)	439
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	440
Bme18I	GGWCC	1 cut(s)	101
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	7, 103
BmsI	GCATC	1 cut(s)	31
BoxI	GACNNNNGTC	1 cut(s)	285
Bpu1102I	GCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	2 cut(s)	11, 176
Bsa29I	ATCGAT	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	198
BsaWI	WCCGGW	2 cut(s)	98, 181
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	415
BseAI	TCCGGA	1 cut(s)	181
BseCI	ATCGAT	1 cut(s)	108
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	415
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	450
BshFI	GGCC	2 cut(s)	125, 218
BshVI	ATCGAT	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	99, 182, 264
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	2 cut(s)	205, 293
BsmBI	CGTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	125, 218
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	80, 162
Bsp1720I	GCTNAGC	1 cut(s)	33
BspANI	GGCC	2 cut(s)	125, 218
BspCNI	CTCAG	1 cut(s)	46
BspDI	ATCGAT	1 cut(s)	108
BspEI	TCCGGA	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	7, 103
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	263
BssMI	GATC	2 cut(s)	80, 162
BssNI	GRCGYC	1 cut(s)	198
Bst4CI	ACNGT	3 cut(s)	211, 247, 474
BstACI	GRCGYC	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	2 cut(s)	83, 165
BstMAI	GTCTC	2 cut(s)	205, 293
BstMBI	GATC	2 cut(s)	80, 162
BstPAI	GACNNNNGTC	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
Bsu15I	ATCGAT	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	125, 218
BsuTUI	ATCGAT	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	64
CciI	TCATGA	1 cut(s)	373
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	101
ClaI	ATCGAT	1 cut(s)	108
Csp6I	GTAC	4 cut(s)	53, 76, 223, 352
CviAII	CATG	2 cut(s)	214, 374
CviQI	GTAC	4 cut(s)	53, 76, 223, 352
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	2 cut(s)	82, 164
DpnII	GATC	2 cut(s)	80, 162
EaeI	YGGCCR	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	17
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	2 cut(s)	217, 377
FaiI	YATR	4 cut(s)	161, 215, 360, 375
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	2 cut(s)	213, 373
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	439
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	439
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	1 cut(s)	439
HaeIII	GGCC	2 cut(s)	125, 218
HapII	CCGG	3 cut(s)	99, 182, 264
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	217, 377
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	64, 178, 383
HpaII	CCGG	3 cut(s)	99, 182, 264
HphI	GGTGA	3 cut(s)	88, 253, 455
Hpy166II	GTNNAC	2 cut(s)	14, 256
Hpy188I	TCNGA	3 cut(s)	147, 205, 388
Hpy188III	TCNNGA	3 cut(s)	182, 241, 374
Hpy8I	GTNNAC	2 cut(s)	14, 256
Hpy99I	CGWCG	2 cut(s)	281, 284
HpyAV	CCTTC	4 cut(s)	136, 142, 142, 302
HpyCH4III	ACNGT	3 cut(s)	211, 247, 474
HpyCH4IV	ACGT	2 cut(s)	198, 282
HpyCH4V	TGCA	1 cut(s)	438
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	2 cut(s)	198, 282
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	217, 377
Kpn2I	TCCGGA	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	80, 162
LpnPI	CCDG	7 cut(s)	22, 69, 112, 195, 277, 368, 428
Lsp1109I	GCAGC	1 cut(s)	450
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	2 cut(s)	198, 282
MaeIII	GTNAC	2 cut(s)	94, 287
MalI	GATC	2 cut(s)	82, 164
MboI	GATC	2 cut(s)	80, 162
MfeI	CAATTG	1 cut(s)	137
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	91
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	2 cut(s)	137, 339
MluNI	TGGCCA	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	1 cut(s)	370
Mox20I	TGGCCA	1 cut(s)	218
MroI	TCCGGA	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	4 cut(s)	156, 273, 333, 408
MslI	CAYNNNNRTG	1 cut(s)	212
Msp20I	TGGCCA	1 cut(s)	218
MspI	CCGG	3 cut(s)	99, 182, 264
MunI	CAATTG	1 cut(s)	137
NdeII	GATC	2 cut(s)	80, 162
NlaIII	CATG	2 cut(s)	217, 377
NlaIV	GGNNCC	2 cut(s)	7, 103
NmuCI	GTSAC	2 cut(s)	94, 287
PaeR7I	CTCGAG	1 cut(s)	17
PagI	TCATGA	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	125
PfeI	GAWTC	3 cut(s)	64, 178, 383
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	440
PshAI	GACNNNNGTC	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	7, 103
PspPI	GGNCC	1 cut(s)	101
PspXI	VCTCGAGB	1 cut(s)	17
PsrI	GAACNNNNNNTAC	2 cut(s)	350, 382
PsuI	RGATCY	1 cut(s)	80
PsyI	GACNNNGTC	1 cut(s)	209
RsaI	GTAC	4 cut(s)	54, 77, 224, 353
RsaNI	GTAC	4 cut(s)	53, 76, 223, 352
RseI	CAYNNNNRTG	1 cut(s)	212
SalI	GTCGAC	1 cut(s)	254
SaqAI	TTAA	4 cut(s)	156, 273, 333, 408
SatI	GCNGC	1 cut(s)	439
Sau3AI	GATC	2 cut(s)	80, 162
Sau96I	GGNCC	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	31
Sfr274I	CTCGAG	1 cut(s)	17
SgrAI	CRCCGGYG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	101
SlaI	CTCGAG	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	3 cut(s)	17, 26, 191
SmoI	CTYRAG	3 cut(s)	17, 26, 191
Sse9I	AATT	2 cut(s)	137, 339
SseBI	AGGCCT	1 cut(s)	125
SspMI	CTAG	1 cut(s)	429
StuI	AGGCCT	1 cut(s)	125
TaaI	ACNGT	3 cut(s)	211, 247, 474
TaiI	ACGT	2 cut(s)	201, 285
TaqI	TCGA	3 cut(s)	18, 108, 255
TasI	AATT	2 cut(s)	137, 339
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	3 cut(s)	64, 178, 383
Tru1I	TTAA	4 cut(s)	156, 273, 333, 408
Tru9I	TTAA	4 cut(s)	156, 273, 333, 408
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	2 cut(s)	94, 287
TseI	GCWGC	1 cut(s)	438
Tsp45I	GTSAC	2 cut(s)	94, 287
TspDTI	ATGAA	1 cut(s)	362
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	214
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	101
XhoI	CTCGAG	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	1 cut(s)	429
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.