Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0028159

Physical Location & Seq

Genomic Coordinates Forward (+)

13556850 .. 13559891

Gene Structure 3042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1090400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAGCTTGGTCAACGACACAAGGATAATGTTGCTAAGAAGCTTGCTGATATGTGAAAAGAAAAAGCTGCAAAGGAGAAGGAATAAAAGGAAGCGGAGCGCGCCCTTCTGCAAATTGAAGCACTATCAAAAGGATGTGGCAAACTTAAAGGAGGCTAAAGATTCTCATGTAGTTGAGGTTGATGATGATGATCTAGAGAAATGGCAGTATAACAGCACATCAGGTTATTACTACAATCAAAGTAATGGTTTTTACTATGATACGAATGCGGGCTTCTACTATTCTGATTCTATAGGCAAGTGGGTGACACAGGAAGAGGCATATGCGAACCTGCAGTTCTTATCAAATGCTGGATATAAAAAAAACCATTTTGAAAAAGCCAGCGTCAACCTCAGGTGCAGGATCAGCTACAGAAAACAAAGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015030 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0019222 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071704 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U1

Protein Analysis

143

Amino Acids

16.94

Weight (kDa)

9.51

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OCRE	PF17780	66 - 113	5.8e-14	OCRE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0028159)

Species	Orthologous Gene IDs
malus_domestica	MD10G1090400.v1.1
pyrus_communis	pycom10g07400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	339
AccII	CGCG	1 cut(s)	101
AciI	CCGC	2 cut(s)	94, 269
AclWI	GGATC	1 cut(s)	410
AgsI	TTSAA	2 cut(s)	118, 374
AluBI	AGCT	4 cut(s)	6, 42, 67, 408
AluI	AGCT	4 cut(s)	6, 42, 67, 408
AlwI	GGATC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	67
AspLEI	GCGC	2 cut(s)	101, 103
AsuHPI	GGTGA	1 cut(s)	316
AxyI	CCTNAGG	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	3 cut(s)	291, 332, 409
BfuAI	ACCTGC	1 cut(s)	339
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	189
Bse21I	CCTNAGG	1 cut(s)	392
Bse8I	GATNNNNATC	1 cut(s)	189
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	406
BsePI	GCGCGC	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	418
Bsh1236I	CGCG	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	190, 402
BspACI	CCGC	2 cut(s)	94, 269
BspCNI	CTCAG	1 cut(s)	405
BspFNI	CGCG	1 cut(s)	101
BspMAI	CTGCAG	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	410
BssHII	GCGCGC	1 cut(s)	99
BssMI	GATC	2 cut(s)	190, 402
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	4 cut(s)	44, 101, 271, 382
BstDEI	CTNAG	2 cut(s)	35, 392
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	101
BstHHI	GCGC	2 cut(s)	101, 103
BstKTI	GATC	2 cut(s)	193, 405
BstMBI	GATC	2 cut(s)	190, 402
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 405
BstSFI	CTRYAG	3 cut(s)	291, 332, 409
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	54
Bsu36I	CCTNAGG	1 cut(s)	392
BtsCI	GGATG	1 cut(s)	139
BveI	ACCTGC	1 cut(s)	339
Cac8I	GCNNGC	4 cut(s)	44, 101, 271, 382
CfoI	GCGC	2 cut(s)	101, 103
CseI	GACGC	1 cut(s)	373
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	7 cut(s)	6, 42, 67, 155, 273, 380, 408
CviKI_1	RGCY	7 cut(s)	6, 42, 67, 155, 273, 380, 408
DdeI	CTNAG	2 cut(s)	35, 392
DpnI	GATC	2 cut(s)	192, 404
DpnII	GATC	2 cut(s)	190, 402
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco81I	CCTNAGG	1 cut(s)	392
FaeI	CATG	1 cut(s)	170
FaiI	YATR	8 cut(s)	52, 168, 210, 258, 293, 322, 324, 357
FatI	CATG	1 cut(s)	166
FauI	CCCGC	1 cut(s)	262
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	2 cut(s)	100, 102
GluI	GCNGC	1 cut(s)	68
HgaI	GACGC	1 cut(s)	373
HhaI	GCGC	2 cut(s)	101, 103
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	2 cut(s)	99, 101
HinP1I	GCGC	2 cut(s)	99, 101
HincII	GTYRAC	2 cut(s)	13, 388
HindII	GTYRAC	2 cut(s)	13, 388
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	2 cut(s)	161, 287
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	2 cut(s)	13, 388
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	2 cut(s)	13, 388
HpyAV	CCTTC	2 cut(s)	72, 115
HpyCH4V	TGCA	4 cut(s)	70, 111, 334, 399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 405
HpyF3I	CTNAG	2 cut(s)	35, 392
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	2 cut(s)	99, 101
Kzo9I	GATC	2 cut(s)	190, 402
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	7 cut(s)	207, 296, 336, 344, 379, 385, 394
Lsp1109I	GCAGC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	2 cut(s)	192, 404
MboI	GATC	2 cut(s)	190, 402
MboII	GAAGA	1 cut(s)	326
MluCI	AATT	1 cut(s)	113
MnlI	CCTC	4 cut(s)	145, 169, 310, 401
MseI	TTAA	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	271
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	100, 405
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	2 cut(s)	190, 402
NlaIII	CATG	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	304
PauI	GCGCGC	1 cut(s)	99
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	161, 287
PkrI	GCNGC	1 cut(s)	69
PstI	CTGCAG	1 cut(s)	336
PteI	GCGCGC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	2 cut(s)	190, 402
SfcI	CTRYAG	3 cut(s)	291, 332, 409
Sse9I	AATT	1 cut(s)	113
SsiI	CCGC	2 cut(s)	94, 269
SspMI	CTAG	1 cut(s)	194
TasI	AATT	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	161, 287
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	304
XbaI	TCTAGA	1 cut(s)	193
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.