Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0028159

Physical Location & Seq

Genomic Coordinates Forward (+)

8740628 .. 8742479

Gene Structure 1852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g07400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAGCTTGGTCAACGACACAAGGATAATGTTGCTAAGAAGCTTGCTGATATGCGAAAAGAAAAAGCCTGCAAAGGAGAAGGAAGAAAAGGAAGCGGAGCGCGCCCTTCTGCCAATTGAAGCAAAAGCTAAGCGCAGCTATCAAAAGGATGTGGCAAACTTAAAGGAGGCTAAAGATTCTCGTGTATTTGAGGTTGACGATGATGAACTAGAGAAATGGCAGTATAACAGCACATCAGGTTATTACTACAATCAAAGTAACGGTTTTTACTATGATACGAATGCGGGCTTCTATTATTCCGATTCTATAGGCAAGTGGGTGACACAGGAAGAGGCATATGCGAACACGCAGTTCTTATCAAATGCTGTATATAAAAAAAAACCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015030 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0019222 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071704 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-U1

Protein Analysis

130

Amino Acids

15.13

Weight (kDa)

6.36

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028159)

Species	Orthologous Gene IDs
malus_domestica	MD10G1090400.v1.1
pyrus_communis	pycom10g07400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	102
AciI	CCGC	2 cut(s)	95, 284
AgsI	TTSAA	1 cut(s)	119
AluBI	AGCT	4 cut(s)	6, 42, 128, 138
AluI	AGCT	4 cut(s)	6, 42, 128, 138
ApeKI	GCWGC	1 cut(s)	135
AspLEI	GCGC	3 cut(s)	102, 104, 135
AsuHPI	GGTGA	1 cut(s)	331
BauI	CACGAG	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	209
BfmI	CTRYAG	1 cut(s)	306
BisI	GCNGC	1 cut(s)	136
BlpI	GCTNAGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	137
Bpu1102I	GCTNAGC	1 cut(s)	129
BseGI	GGATG	1 cut(s)	154
BsePI	GCGCGC	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	286
Bsp1720I	GCTNAGC	1 cut(s)	129
BspACI	CCGC	2 cut(s)	95, 284
BspFNI	CGCG	1 cut(s)	102
BssHII	GCGCGC	1 cut(s)	100
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	324
BstC8I	GCNNGC	4 cut(s)	44, 69, 102, 286
BstDEI	CTNAG	2 cut(s)	35, 129
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	3 cut(s)	102, 104, 135
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	306
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	4 cut(s)	44, 69, 102, 286
CfoI	GCGC	3 cut(s)	102, 104, 135
CviJI	RGCY	7 cut(s)	6, 42, 67, 128, 138, 170, 288
CviKI_1	RGCY	7 cut(s)	6, 42, 67, 128, 138, 170, 288
DdeI	CTNAG	2 cut(s)	35, 129
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
FaiI	YATR	8 cut(s)	52, 225, 273, 308, 337, 339, 370, 372
FauI	CCCGC	1 cut(s)	277
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	3 cut(s)	101, 103, 134
GluI	GCNGC	1 cut(s)	136
HhaI	GCGC	3 cut(s)	102, 104, 135
Hin6I	GCGC	3 cut(s)	100, 102, 133
HinP1I	GCGC	3 cut(s)	100, 102, 133
HincII	GTYRAC	2 cut(s)	13, 196
HindII	GTYRAC	2 cut(s)	13, 196
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	2 cut(s)	176, 302
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	2 cut(s)	13, 196
Hpy188I	TCNGA	1 cut(s)	301
Hpy8I	GTNNAC	2 cut(s)	13, 196
HpyAV	CCTTC	2 cut(s)	73, 116
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	2 cut(s)	35, 129
HspAI	GCGC	3 cut(s)	100, 102, 133
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	3 cut(s)	81, 222, 311
Lsp1109I	GCAGC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	2 cut(s)	257, 319
MboII	GAAGA	2 cut(s)	95, 341
MfeI	CAATTG	1 cut(s)	114
MluCI	AATT	1 cut(s)	114
MnlI	CCTC	3 cut(s)	160, 184, 325
MseI	TTAA	1 cut(s)	161
MunI	CAATTG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	286
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeI	CATATG	1 cut(s)	337
NmuCI	GTSAC	1 cut(s)	319
PauI	GCGCGC	1 cut(s)	100
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	176, 302
PkrI	GCNGC	1 cut(s)	137
PteI	GCGCGC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	1 cut(s)	136
SetI	ASST	6 cut(s)	8, 44, 130, 140, 195, 241
SfcI	CTRYAG	1 cut(s)	306
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	2 cut(s)	95, 284
SspMI	CTAG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	263
TasI	AATT	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	176, 302
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	219
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.