MD10G1135200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0028197
Physical Location & Seq
Forward (+)
21802119 .. 21802545
427 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1135200.v1.1.491

Sequence Viewer

Length: 183 bp
ATGAGGAAGGAAGAAGATGGTCTGGAGCCAAAGTCCGGCACCATGAGAGTAAAACTTGGAACGACAGCGTTTTGGAGTCATAGTGATGGTGCCTTCCGGGTGTTGTCAGTTGGAGGGAAAGGGAGAGAGAGAGCTGGAACGATGGAGCTCAGTGTTGCCAAATCGTTCTCCAAAGTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.52

Weight (kDa)

9.69

Isoelectric Point (pI)

5.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028197)

Species Orthologous Gene IDs
malus_domestica MD10G1135200.v1.1
pyrus_communis pycom10g11980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 38, 89
AfiI CCNNNNNNNGG 1 cut(s) 35
AluBI AGCT 2 cut(s) 134, 148
AluI AGCT 2 cut(s) 134, 148
Alw21I GWGCWC 1 cut(s) 150
AsuC2I CCSGG 1 cut(s) 98
BanI GGYRCC 2 cut(s) 38, 89
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 3 cut(s) 11, 80, 136
BcnI CCSGG 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 98
BmiI GGNNCC 3 cut(s) 27, 40, 91
BmrFI CCNGG 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 98
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 67, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 163
BshNI GGYRCC 2 cut(s) 38, 89
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 36, 97
BslI CCNNNNNNNGG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 3 cut(s) 27, 40, 91
BspT107I GGYRCC 2 cut(s) 38, 89
BstDEI CTNAG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 157
CviAII CATG 1 cut(s) 43
CviJI RGCY 3 cut(s) 28, 134, 148
CviKI_1 RGCY 3 cut(s) 28, 134, 148
DdeI CTNAG 1 cut(s) 149
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 1 cut(s) 46
FaiI YATR 2 cut(s) 44, 81
FatI CATG 1 cut(s) 42
FriOI GRGCYC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 44
HapII CCGG 2 cut(s) 36, 97
Hin1II CATG 1 cut(s) 46
HinfI GANTC 1 cut(s) 76
HpaII CCGG 2 cut(s) 36, 97
Hpy188III TCNNGA 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 103
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 1 cut(s) 46
LmnI GCTCC 2 cut(s) 25, 145
LpnPI CCDG 4 cut(s) 8, 49, 110, 120
MboII GAAGA 2 cut(s) 23, 26
MhlI GDGCHC 1 cut(s) 150
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 1 cut(s) 107
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 2 cut(s) 36, 97
MspR9I CCNGG 1 cut(s) 98
NciI CCSGG 1 cut(s) 98
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 3 cut(s) 27, 40, 91
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 150
PspN4I GGNNCC 3 cut(s) 27, 40, 91
RseI CAYNNNNRTG 1 cut(s) 84
SacI GAGCTC 1 cut(s) 150
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 150
SetI ASST 2 cut(s) 136, 150
SgeI CNNG 7 cut(s) 35, 48, 55, 68, 109, 110, 147
SmiMI CAYNNNNRTG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 96
TscAI CASTG 1 cut(s) 157
TspRI CASTG 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.