MD10G1198200.v1.1

NAD(P)-binding Rossmann-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0028207
Physical Location & Seq
Forward (+)
29615003 .. 29617324
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1198200.v1.1.491

Sequence Viewer

Length: 537 bp
ATGAATTCTATATGCAGAATGTTGGTTCATGAGCATTACGCCAGGAATCCAGTTGTAAATTCTACTGATTTTCTGTTGGCACGATTTCTATTCAAGGTTGAATATCTGTTGGAACTTAATTGCACTATAATTTCTTTAGGTGTGGAAAGTAGTTTGGGGCGAGTGTTGGGAGGTTCAGATGGGCAAAATCTTGGCCAGTTTAAGGGAGTGGTTGCAACGGACAAAAACCTTGTTTCGCTCAGGTTTACAAGTGTTACAGGAAGACAACCACTTCTTGTACCCCTTAAAGGTTTCTCAATAAGAAGTTCTGAAGTTTTAAGCTGGGCTCACTGTGAAAGCAGCAAGCCTGGCCGTTCTACCTCTAGGGAAGGCCCTTTTCCAGCTGCAAGCGTAGCCAGAGAGGAGAAATGCCTTTGGGATAAGAACAAGAGGCTTGCTATCTGTGGAGATTTCTGTGTTAGTCCTAATGTTGAAGGTGCTATAGCTAGCAGAATAGCTGCTGCGTCAAAACTCACAGAGATCCTCAGCAGCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

179

Amino Acids

19.36

Weight (kDa)

9.0

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028207)

Species Orthologous Gene IDs
malus_domestica MD10G1198200.v1.1
pyrus_communis pycom10g17080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 514
AcoI YGGCCR 2 cut(s) 193, 349
AcsI RAATTY 2 cut(s) 4, 58
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 2 cut(s) 202, 287
AgsI TTSAA 3 cut(s) 94, 101, 473
AjnI CCWGG 2 cut(s) 41, 346
AluBI AGCT 5 cut(s) 321, 383, 485, 497, 531
AluI AGCT 5 cut(s) 321, 383, 485, 497, 531
AlwI GGATC 1 cut(s) 514
AoxI GGCC 3 cut(s) 193, 349, 370
ApeKI GCWGC 5 cut(s) 339, 383, 497, 500, 528
ApoI RAATTY 2 cut(s) 4, 58
AspS9I GGNCC 1 cut(s) 371
AsuNHI GCTAGC 1 cut(s) 485
BalI TGGCCA 1 cut(s) 195
BanII GRGCYC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 524
BbvI GCAGC 4 cut(s) 351, 370, 484, 487
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 336
BciT130I CCWGG 2 cut(s) 43, 348
BfaI CTAG 2 cut(s) 363, 486
BfmI CTRYAG 1 cut(s) 480
BisI GCNGC 5 cut(s) 340, 384, 498, 501, 529
BlsI GCNGC 5 cut(s) 341, 385, 499, 502, 530
Bme1390I CCNGG 2 cut(s) 43, 348
BmgT120I GGNCC 1 cut(s) 371
BmrFI CCNGG 2 cut(s) 43, 348
BmtI GCTAGC 1 cut(s) 489
BpiI GAAGAC 1 cut(s) 268
Bpu10I CCTNAGC 2 cut(s) 239, 524
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 287
Bse1I ACTGG 2 cut(s) 50, 196
BseBI CCWGG 2 cut(s) 43, 348
BseLI CCNNNNNNNGG 2 cut(s) 202, 287
BseMII CTCAG 1 cut(s) 253
BseNI ACTGG 2 cut(s) 50, 196
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 4 cut(s) 351, 370, 484, 487
BseYI CCCAGC 1 cut(s) 321
BshFI GGCC 3 cut(s) 195, 351, 372
BslI CCNNNNNNNGG 2 cut(s) 202, 287
BsnI GGCC 3 cut(s) 195, 351, 372
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 1 cut(s) 519
BspANI GGCC 3 cut(s) 195, 351, 372
BspCNI CTCAG 2 cut(s) 252, 537
BspHI TCATGA 1 cut(s) 28
BspOI GCTAGC 1 cut(s) 489
BspPI GGATC 1 cut(s) 514
BsrI ACTGG 2 cut(s) 50, 196
BssMI GATC 1 cut(s) 519
Bst2UI CCWGG 2 cut(s) 43, 348
Bst4CI ACNGT 1 cut(s) 332
BstC8I GCNNGC 4 cut(s) 344, 388, 435, 487
BstDEI CTNAG 2 cut(s) 239, 524
BstKTI GATC 1 cut(s) 522
BstMBI GATC 1 cut(s) 519
BstMWI GCNNNNNNNGC 2 cut(s) 348, 392
BstNI CCWGG 2 cut(s) 43, 348
BstSCI CCNGG 2 cut(s) 41, 346
BstSFI CTRYAG 1 cut(s) 480
BstV1I GCAGC 4 cut(s) 351, 370, 484, 487
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 519
BstYI RGATCY 1 cut(s) 519
BsuRI GGCC 3 cut(s) 195, 351, 372
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 4 cut(s) 344, 388, 435, 487
CciI TCATGA 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 371
CseI GACGC 1 cut(s) 492
Csp6I GTAC 1 cut(s) 278
CviAII CATG 1 cut(s) 29
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 2 cut(s) 239, 524
DpnI GATC 1 cut(s) 521
DpnII GATC 1 cut(s) 519
EaeI YGGCCR 2 cut(s) 193, 349
Eco24I GRGCYC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 330
EcoO109I RGGNCCY 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 41, 346
EcoT38I GRGCYC 1 cut(s) 328
FaeI CATG 1 cut(s) 32
FaiI YATR 6 cut(s) 11, 13, 30, 128, 482, 535
FatI CATG 1 cut(s) 28
Fnu4HI GCNGC 5 cut(s) 340, 384, 498, 501, 529
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 5 cut(s) 340, 384, 498, 501, 529
FspBI CTAG 2 cut(s) 363, 486
GluI GCNGC 5 cut(s) 340, 384, 498, 501, 529
GsaI CCCAGC 1 cut(s) 325
HaeIII GGCC 3 cut(s) 195, 351, 372
HgaI GACGC 1 cut(s) 492
Hin1II CATG 1 cut(s) 32
HinfI GANTC 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 2 cut(s) 178, 310
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 2 cut(s) 362, 467
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 4 cut(s) 15, 123, 215, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 392
HpyF3I CTNAG 2 cut(s) 239, 524
Hsp92II CATG 1 cut(s) 32
Kzo9I GATC 1 cut(s) 519
Lsp1109I GCAGC 4 cut(s) 351, 370, 484, 487
MaeI CTAG 2 cut(s) 363, 486
MaeIII GTNAC 1 cut(s) 253
MalI GATC 1 cut(s) 521
MboI GATC 1 cut(s) 519
MboII GAAGA 1 cut(s) 273
MflI RGATCY 1 cut(s) 519
MhlI GDGCHC 1 cut(s) 328
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 4 cut(s) 4, 58, 118, 129
MluNI TGGCCA 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 5 cut(s) 164, 370, 394, 423, 533
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MseI TTAA 4 cut(s) 117, 201, 285, 317
Msp20I TGGCCA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 383
MspR9I CCNGG 2 cut(s) 43, 348
MvaI CCWGG 2 cut(s) 43, 348
MwoI GCNNNNNNNGC 2 cut(s) 348, 392
NdeII GATC 1 cut(s) 519
NheI GCTAGC 1 cut(s) 485
NlaIII CATG 1 cut(s) 32
PagI TCATGA 1 cut(s) 28
PfeI GAWTC 1 cut(s) 46
PkrI GCNGC 5 cut(s) 341, 385, 499, 502, 530
Psp6I CCWGG 2 cut(s) 41, 346
PspFI CCCAGC 1 cut(s) 321
PspGI CCWGG 2 cut(s) 41, 346
PspPI GGNCC 1 cut(s) 371
PsuI RGATCY 1 cut(s) 519
PvuII CAGCTG 1 cut(s) 383
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SaqAI TTAA 4 cut(s) 117, 201, 285, 317
SatI GCNGC 5 cut(s) 340, 384, 498, 501, 529
Sau3AI GATC 1 cut(s) 519
Sau96I GGNCC 1 cut(s) 371
ScrFI CCNGG 2 cut(s) 43, 348
SduI GDGCHC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 480
Sse9I AATT 4 cut(s) 4, 58, 118, 129
SspMI CTAG 2 cut(s) 363, 486
StyD4I CCNGG 2 cut(s) 41, 346
TaaI ACNGT 1 cut(s) 332
TasI AATT 4 cut(s) 4, 58, 118, 129
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 4 cut(s) 117, 201, 285, 317
Tru9I TTAA 4 cut(s) 117, 201, 285, 317
TscAI CASTG 1 cut(s) 335
TseI GCWGC 5 cut(s) 339, 383, 497, 500, 528
TspDTI ATGAA 2 cut(s) 17, 17
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 1 cut(s) 335
XapI RAATTY 2 cut(s) 4, 58
XspI CTAG 2 cut(s) 363, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.