pycom10g17080

NAD(P)-binding Rossmann-like domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
20247508 .. 20248298
791 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g17080.1

Sequence Viewer

Length: 549 bp
ATGTCAATATTATTTGGAAATTCAAATGACGAAGCTATTGATTTTGGGTGCGAGTTGGTACATATGAGTTTCTTTTTCCTTTTGATTACTGAAAATTTAGTTGTAGGGAAGTTGTTGAGGATGGGAAGGAACTGTTGTTTGACCGTTGTGCTCCATTTTTCAATGCCAACAACACTGAGATTTTGGGTCTTGTTCATGAGTGGGAATCAAAGGGTCTTGTTAATGTTGGTTCATAAGCATTATGCCAGGAGTCCGGTATGTACTAATTCTACTGATTTTCTGTTGGCACGATTTCTATTCAAGGTTGAATATCTGTTGGAACTTAATTGCGCTATAATTTCTTTAGGAGTGGAAAGTAGTTTGGGGCGAGTGTTGGGGGGTTCAGATGGGCAAAATCTTGGCCAGTTTAAGGGAGTGGTTGCAACAGACAAAAACCTTATTTCGCTCAGGTTTACAAGTGTTACGGGAAGACAACCACTTCTTGGGATTGAACACACTCCTTCAAGTTTTTCTATTCTAAGCATGTCTAGAAAATTTTCGCAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

183

Amino Acids

20.38

Weight (kDa)

8.93

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028207)

Species Orthologous Gene IDs
malus_domestica MD10G1198200.v1.1
pyrus_communis pycom10g17080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 3 cut(s) 19, 94, 533
AfaI GTAC 2 cut(s) 60, 262
AfiI CCNNNNNNNGG 2 cut(s) 409, 482
AgsI TTSAA 6 cut(s) 24, 162, 301, 308, 491, 504
AjnI CCWGG 1 cut(s) 245
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw21I GWGCWC 1 cut(s) 153
AoxI GGCC 1 cut(s) 400
ApoI RAATTY 3 cut(s) 19, 94, 533
Asp700I GAANNNNTTC 1 cut(s) 535
AspLEI GCGC 1 cut(s) 332
BalI TGGCCA 1 cut(s) 402
BbsI GAAGAC 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 153
BccI CCATC 2 cut(s) 115, 380
BciT130I CCWGG 1 cut(s) 247
BfaI CTAG 1 cut(s) 528
Bme1390I CCNGG 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 247
BpiI GAAGAC 1 cut(s) 475
Bpu10I CCTNAGC 1 cut(s) 446
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 482
Bse1I ACTGG 1 cut(s) 403
BseBI CCWGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 409, 482
BseMII CTCAG 2 cut(s) 167, 460
BseNI ACTGG 1 cut(s) 403
BshFI GGCC 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 409, 482
BsnI GGCC 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 153
BspANI GGCC 1 cut(s) 402
BspCNI CTCAG 2 cut(s) 168, 459
BspHI TCATGA 1 cut(s) 195
BsrI ACTGG 1 cut(s) 403
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 2 cut(s) 134, 145
BstDEI CTNAG 3 cut(s) 176, 446, 518
BstF5I GGATG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 332
BstNI CCWGG 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 475
BsuRI GGCC 1 cut(s) 402
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 173
CciI TCATGA 1 cut(s) 195
CfoI GCGC 1 cut(s) 332
Csp6I GTAC 2 cut(s) 59, 261
CviAII CATG 2 cut(s) 196, 523
CviJI RGCY 2 cut(s) 35, 402
CviKI_1 RGCY 2 cut(s) 35, 402
CviQI GTAC 2 cut(s) 59, 261
DdeI CTNAG 3 cut(s) 176, 446, 518
EaeI YGGCCR 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 245
FaeI CATG 2 cut(s) 199, 526
FaiI YATR 8 cut(s) 63, 65, 197, 234, 243, 259, 335, 524
FatI CATG 2 cut(s) 195, 522
FauNDI CATATG 1 cut(s) 63
FokI GGATG 1 cut(s) 133
FspBI CTAG 1 cut(s) 528
GlaI GCGC 1 cut(s) 331
HaeIII GGCC 1 cut(s) 402
HapII CCGG 1 cut(s) 254
HhaI GCGC 1 cut(s) 332
Hin1II CATG 2 cut(s) 199, 526
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HinfI GANTC 2 cut(s) 205, 250
HpaII CCGG 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 2 cut(s) 196, 528
Hpy8I GTNNAC 1 cut(s) 453
HpyAV CCTTC 2 cut(s) 120, 510
HpyCH4III ACNGT 2 cut(s) 134, 145
HpyCH4V TGCA 1 cut(s) 422
HpyF3I CTNAG 3 cut(s) 176, 446, 518
Hsp92II CATG 2 cut(s) 199, 526
HspAI GCGC 1 cut(s) 330
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 5 cut(s) 232, 259, 267, 416, 433
MaeI CTAG 1 cut(s) 528
MaeIII GTNAC 1 cut(s) 460
MboII GAAGA 1 cut(s) 480
MhlI GDGCHC 1 cut(s) 153
MlsI TGGCCA 1 cut(s) 402
MluCI AATT 6 cut(s) 19, 94, 265, 325, 336, 533
MluNI TGGCCA 1 cut(s) 402
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 1 cut(s) 111
Mox20I TGGCCA 1 cut(s) 402
MroXI GAANNNNTTC 1 cut(s) 535
MscI TGGCCA 1 cut(s) 402
MseI TTAA 4 cut(s) 221, 324, 408, 547
Msp20I TGGCCA 1 cut(s) 402
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 247
MvaI CCWGG 1 cut(s) 247
NdeI CATATG 1 cut(s) 63
NlaIII CATG 2 cut(s) 199, 526
NspI RCATGY 1 cut(s) 526
PagI TCATGA 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 535
PfeI GAWTC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 482
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 245
PspGI CCWGG 1 cut(s) 245
RsaI GTAC 2 cut(s) 60, 262
RsaNI GTAC 2 cut(s) 59, 261
SaqAI TTAA 4 cut(s) 221, 324, 408, 547
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 247
SduI GDGCHC 1 cut(s) 153
SetI ASST 4 cut(s) 37, 306, 438, 452
Sse9I AATT 6 cut(s) 19, 94, 265, 325, 336, 533
SspI AATATT 2 cut(s) 9, 545
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 245
TaaI ACNGT 2 cut(s) 134, 145
TasI AATT 6 cut(s) 19, 94, 265, 325, 336, 533
TatI WGTACW 1 cut(s) 260
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 4 cut(s) 221, 324, 408, 547
Tru9I TTAA 4 cut(s) 221, 324, 408, 547
TscAI CASTG 1 cut(s) 180
TspDTI ATGAA 2 cut(s) 184, 221
TspRI CASTG 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 482
XapI RAATTY 3 cut(s) 19, 94, 533
XbaI TCTAGA 1 cut(s) 527
XceI RCATGY 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 535
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.