MD10G1200900.v1.1

transferase activity, transferring glycosyl groups

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0028219
Physical Location & Seq
Reverse (-)
29916869 .. 29918468
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1200900.v1.1.491

Sequence Viewer

Length: 486 bp
ATGACCAAATCGCAGCAATTCAAATTTGGCGTGCTGGATGATTGGGTTCTGTGCCGAATATACAACAAGAAGGGGACCGTGGAGAACCAGCAGCCTCAGCAGCAGCAAGAACAACAGCGAACGACTAGTCGTAACGCGAGCAGTGGCTCGGAGTTCGAGGACAGGAAGCCGGATAATCTGAGGTGCCCGCCGCCGCCGGCTTCCGTGGTCCCCAGTCGTCACGTGAGCGATTACGTGTACTTCGACAACTCTGACTCGGTGCCGAAGCTGCACACGGACTCGAGCTGCTCGGAGCAGGTGGTGTCGCCGGAGTTGGCGTGCGAGGTGCAGAGCGAGCCCAAGTGGAAGGAGTGGGAGAAGGCGCTGGAAATGCCGTACAGTTACATGGATACGACGGTGGAGAACGGGTTCGGAGCGCAGTTCCAGAGCGGGAATGAGATGTCGCCGCTGCAGGATATCTTTATGTACCTGCAGAAGCCGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

162

Amino Acids

18.55

Weight (kDa)

4.85

Isoelectric Point (pI)

72.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028219)

Species Orthologous Gene IDs
malus_domestica MD10G1200900.v1.1
rosa_multiflora Rmu_sc0042098.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 286
Acc36I ACCTGC 2 cut(s) 286, 477
AccB1I GGYRCC 2 cut(s) 183, 259
AccBSI CCGCTC 1 cut(s) 429
AccII CGCG 1 cut(s) 137
AciI CCGC 5 cut(s) 188, 191, 194, 429, 446
AcsI RAATTY 1 cut(s) 23
AcvI CACGTG 1 cut(s) 223
AfaI GTAC 4 cut(s) 239, 377, 467, 482
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 1 cut(s) 22
AhlI ACTAGT 1 cut(s) 125
AloI GAACNNNNNNTCC 2 cut(s) 392, 424
AluBI AGCT 2 cut(s) 268, 285
AluI AGCT 2 cut(s) 268, 285
Ama87I CYCGRG 1 cut(s) 280
ApeKI GCWGC 7 cut(s) 13, 91, 100, 103, 268, 285, 448
ApoI RAATTY 1 cut(s) 23
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
Asp700I GAANNNNTTC 1 cut(s) 407
AspLEI GCGC 2 cut(s) 364, 418
AspS9I GGNCC 2 cut(s) 75, 208
AvaI CYCGRG 1 cut(s) 280
AvaII GGWCC 2 cut(s) 75, 208
BaeGI GKGCMC 1 cut(s) 188
BaeI ACNNNNGTAYC 2 cut(s) 381, 414
BanI GGYRCC 2 cut(s) 183, 259
BanII GRGCYC 1 cut(s) 339
BbrPI CACGTG 1 cut(s) 223
BbvCI CCTCAGC 1 cut(s) 96
BbvI GCAGC 7 cut(s) 25, 103, 112, 115, 255, 272, 435
BceAI ACGGC 2 cut(s) 358, 463
BciVI GTATCC 1 cut(s) 382
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 2 cut(s) 449, 470
BfoI RGCGCY 1 cut(s) 365
BfuAI ACCTGC 2 cut(s) 286, 477
BfuI GTATCC 1 cut(s) 382
Bme18I GGWCC 2 cut(s) 75, 208
BmeT110I CYCGRG 1 cut(s) 280
BmgT120I GGNCC 2 cut(s) 75, 208
BmiI GGNNCC 4 cut(s) 76, 185, 210, 261
BmrI ACTGGG 1 cut(s) 207
BmuI ACTGGG 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 96
BsaAI YACGTR 2 cut(s) 223, 235
BsaJI CCNNGG 2 cut(s) 78, 204
BsaXI ACNNNNNCTCC 4 cut(s) 302, 332, 392, 422
Bse118I RCCGGY 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 78, 204
BseGI GGATG 1 cut(s) 43
BseMII CTCAG 2 cut(s) 110, 170
BseNI ACTGG 1 cut(s) 213
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 7 cut(s) 25, 103, 112, 115, 255, 272, 435
BsgI GTGCAG 2 cut(s) 254, 347
Bsh1236I CGCG 1 cut(s) 137
BshNI GGYRCC 2 cut(s) 183, 259
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 3 cut(s) 170, 197, 308
BslFI GGGAC 2 cut(s) 88, 194
BsmFI GGGAC 2 cut(s) 88, 194
BsoBI CYCGRG 1 cut(s) 280
Bsp1286I GDGCHC 2 cut(s) 188, 339
BspACI CCGC 5 cut(s) 188, 191, 194, 429, 446
BspCNI CTCAG 2 cut(s) 109, 171
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 4 cut(s) 76, 185, 210, 261
BspMAI CTGCAG 2 cut(s) 453, 474
BspMI ACCTGC 2 cut(s) 286, 477
BspT107I GGYRCC 2 cut(s) 183, 259
BsrBI CCGCTC 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 196
BsrI ACTGG 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 78, 204
Bst4CI ACNGT 3 cut(s) 79, 380, 397
BstBAI YACGTR 2 cut(s) 223, 235
BstC8I GCNNGC 6 cut(s) 32, 139, 188, 198, 319, 335
BstDEI CTNAG 2 cut(s) 96, 179
BstDSI CCRYGG 2 cut(s) 78, 204
BstF5I GGATG 1 cut(s) 43
BstFNI CGCG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 2 cut(s) 364, 418
BstMWI GCNNNNNNNGC 5 cut(s) 97, 100, 268, 334, 370
BstSFI CTRYAG 2 cut(s) 449, 470
BstSLI GKGCMC 1 cut(s) 188
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 7 cut(s) 25, 103, 112, 115, 255, 272, 435
BsuI GTATCC 1 cut(s) 382
BtgI CCRYGG 2 cut(s) 78, 204
BtsCI GGATG 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 148
BveI ACCTGC 2 cut(s) 286, 477
Cac8I GCNNGC 6 cut(s) 32, 139, 188, 198, 319, 335
CfoI GCGC 2 cut(s) 364, 418
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 75, 208
Csp6I GTAC 4 cut(s) 238, 376, 466, 481
CviAII CATG 1 cut(s) 385
CviJI RGCY 8 cut(s) 94, 147, 169, 200, 268, 285, 337, 478
CviKI_1 RGCY 8 cut(s) 94, 147, 169, 200, 268, 285, 337, 478
CviQI GTAC 4 cut(s) 238, 376, 466, 481
DdeI CTNAG 2 cut(s) 96, 179
Eco24I GRGCYC 1 cut(s) 339
Eco32I GATATC 1 cut(s) 457
Eco47I GGWCC 2 cut(s) 75, 208
Eco72I CACGTG 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 280
EcoRV GATATC 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 339
FaeI CATG 1 cut(s) 388
FaiI YATR 3 cut(s) 61, 386, 464
FaqI GGGAC 2 cut(s) 88, 194
FatI CATG 1 cut(s) 384
FauI CCCGC 2 cut(s) 195, 422
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 339
FspBI CTAG 1 cut(s) 126
GlaI GCGC 2 cut(s) 363, 417
HaeII RGCGCY 1 cut(s) 365
HapII CCGG 3 cut(s) 170, 197, 308
HhaI GCGC 2 cut(s) 364, 418
Hin1II CATG 1 cut(s) 388
Hin6I GCGC 2 cut(s) 362, 416
HinP1I GCGC 2 cut(s) 362, 416
HinfI GANTC 2 cut(s) 254, 278
HpaII CCGG 3 cut(s) 170, 197, 308
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 5 cut(s) 151, 180, 253, 292, 413
Hpy188III TCNNGA 1 cut(s) 424
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 1 cut(s) 397
HpyAV CCTTC 3 cut(s) 64, 340, 352
HpyCH4III ACNGT 3 cut(s) 79, 380, 397
HpyCH4IV ACGT 2 cut(s) 222, 234
HpyCH4V TGCA 4 cut(s) 271, 328, 451, 472
HpyF10VI GCNNNNNNNGC 5 cut(s) 97, 100, 268, 334, 370
HpyF3I CTNAG 2 cut(s) 96, 179
HpySE526I ACGT 2 cut(s) 222, 234
Hsp92II CATG 1 cut(s) 388
HspAI GCGC 2 cut(s) 362, 416
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
LmnI GCTCC 2 cut(s) 292, 413
Lsp1109I GCAGC 7 cut(s) 25, 103, 112, 115, 255, 272, 435
MaeI CTAG 1 cut(s) 126
MaeII ACGT 2 cut(s) 222, 234
MaeIII GTNAC 3 cut(s) 131, 218, 380
MbiI CCGCTC 1 cut(s) 429
MhlI GDGCHC 2 cut(s) 188, 339
MluCI AATT 2 cut(s) 17, 23
MlyI GAGTC 2 cut(s) 248, 272
MnlI CCTC 4 cut(s) 105, 151, 174, 316
MroNI GCCGGC 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 407
MspA1I CMGCKG 1 cut(s) 448
MspI CCGG 3 cut(s) 170, 197, 308
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 5 cut(s) 97, 100, 268, 334, 370
NaeI GCCGGC 1 cut(s) 198
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 4 cut(s) 76, 185, 210, 261
NmuCI GTSAC 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 280
PaqCI CACCTGC 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PdiI GCCGGC 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 407
PleI GAGTC 2 cut(s) 248, 272
PmaCI CACGTG 1 cut(s) 223
PmlI CACGTG 1 cut(s) 223
PpsI GAGTC 2 cut(s) 248, 272
Ppu21I YACGTR 2 cut(s) 223, 235
PspCI CACGTG 1 cut(s) 223
PspN4I GGNNCC 4 cut(s) 76, 185, 210, 261
PspPI GGNCC 2 cut(s) 75, 208
PspXI VCTCGAGB 1 cut(s) 280
PstI CTGCAG 2 cut(s) 453, 474
RsaI GTAC 4 cut(s) 239, 377, 467, 482
RsaNI GTAC 4 cut(s) 238, 376, 466, 481
Sau96I GGNCC 2 cut(s) 75, 208
SchI GAGTC 2 cut(s) 248, 272
SduI GDGCHC 2 cut(s) 188, 339
SetI ASST 8 cut(s) 185, 225, 237, 270, 287, 300, 327, 471
SfcI CTRYAG 2 cut(s) 449, 470
Sfr274I CTCGAG 1 cut(s) 280
SinI GGWCC 2 cut(s) 75, 208
SlaI CTCGAG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 2 cut(s) 17, 23
SsiI CCGC 5 cut(s) 188, 191, 194, 429, 446
SspMI CTAG 1 cut(s) 126
TaaI ACNGT 3 cut(s) 79, 380, 397
TaiI ACGT 2 cut(s) 225, 237
TaqI TCGA 3 cut(s) 156, 243, 281
TasI AATT 2 cut(s) 17, 23
TatI WGTACW 1 cut(s) 237
TauI GCSGC 3 cut(s) 193, 196, 448
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 7 cut(s) 13, 91, 100, 103, 268, 285, 448
Tsp45I GTSAC 1 cut(s) 218
TspGWI ACGGA 2 cut(s) 193, 290
TspRI CASTG 1 cut(s) 148
VpaK11BI GGWCC 2 cut(s) 75, 208
XapI RAATTY 1 cut(s) 23
XhoI CTCGAG 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 407
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.