Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042098.1

Orthogroup ID

OG0028219

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 567

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042098.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ttggacgattgggttctgtgccgcatatacaacaaaaaggggacggcggagaagcaacagccgccgatgagtcggaaggcggtgagcggcgggtcggaattcgaggacgtgaagcctgagaatctgatggtgtgcccaccaccgccggcggtggcggccacgcgcccgagtgagtacgtgtactttgacaactcggattcggtgccccggctgcacacggactcgagctgctcggagcaggtggtgtcgccggagttcacgagcgaggtgcagagcgagcccaagtggaaggagtgggagaaggcccttgattttccttacaattacggggatgccaccgtggaaaacggggggttcggggcgcagtttcagggtgggaatcagatgtcgccgctgcaggatattttcatgtacctgcagaagccctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009787 GO:0009788 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048316 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900150 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901420 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905623 GO:1905957 GO:1905958 GO:2000024 GO:2000026 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

143

Amino Acids

16.11

Weight (kDa)

4.6

Isoelectric Point (pI)

65.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028219)

Species	Orthologous Gene IDs
malus_domestica	MD10G1200900.v1.1
rosa_multiflora	Rmu_sc0042098.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	229
Acc36I	ACCTGC	2 cut(s)	229, 423
AccB1I	GGYRCC	1 cut(s)	202
AccBSI	CCGCTC	1 cut(s)	87
AccII	CGCG	1 cut(s)	163
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	98
AfaI	GTAC	3 cut(s)	176, 182, 413
AflIII	ACRYGT	1 cut(s)	177
AjiI	CACGTC	1 cut(s)	109
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
Ama87I	CYCGRG	2 cut(s)	166, 223
AoxI	GGCC	2 cut(s)	156, 303
ApeKI	GCWGC	3 cut(s)	211, 228, 394
ApoI	RAATTY	1 cut(s)	98
AspLEI	GCGC	2 cut(s)	165, 364
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	94
AvaI	CYCGRG	2 cut(s)	166, 223
BaeGI	GKGCMC	2 cut(s)	137, 207
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	282
BauI	CACGAG	1 cut(s)	259
BbvI	GCAGC	3 cut(s)	198, 215, 381
BccI	CCATC	1 cut(s)	121
BceAI	ACGGC	1 cut(s)	60
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BcnI	CCSGG	1 cut(s)	208
BfmI	CTRYAG	2 cut(s)	395, 416
BfuAI	ACCTGC	2 cut(s)	229, 423
BisI	GCNGC	8 cut(s)	22, 62, 88, 156, 212, 229, 392, 395
BlsI	GCNGC	8 cut(s)	23, 63, 89, 157, 213, 230, 393, 396
Bme1390I	CCNGG	1 cut(s)	208
BmeT110I	CYCGRG	2 cut(s)	166, 223
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	1 cut(s)	322
BpuMI	CCSGG	1 cut(s)	208
BsaAI	YACGTR	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	206, 339
Bse118I	RCCGGY	1 cut(s)	145
BseDI	CCNNGG	2 cut(s)	206, 339
BseGI	GGATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	108
BseSI	GKGCMC	2 cut(s)	137, 207
BseXI	GCAGC	3 cut(s)	198, 215, 381
BsgI	GTGCAG	2 cut(s)	197, 290
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	2 cut(s)	158, 305
BshNI	GGYRCC	1 cut(s)	202
BsiHKCI	CYCGRG	2 cut(s)	166, 223
BsiSI	CCGG	3 cut(s)	146, 208, 251
BslFI	GGGAC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	158, 305
BsoBI	CYCGRG	2 cut(s)	166, 223
Bsp1286I	GDGCHC	3 cut(s)	137, 207, 282
BspANI	GGCC	2 cut(s)	158, 305
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	204
BspMAI	CTGCAG	2 cut(s)	399, 420
BspMI	ACCTGC	2 cut(s)	229, 423
BspT107I	GGYRCC	1 cut(s)	202
BsrBI	CCGCTC	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	206, 339
BssSI	CACGAG	1 cut(s)	259
Bst2BI	CACGAG	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	340
BstBAI	YACGTR	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	147, 278
BstDEI	CTNAG	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	165, 364
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 155, 211, 277
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	2 cut(s)	395, 416
BstSLI	GKGCMC	2 cut(s)	137, 207
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	3 cut(s)	198, 215, 381
BsuRI	GGCC	2 cut(s)	158, 305
BtgI	CCRYGG	1 cut(s)	339
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	337
BveI	ACCTGC	2 cut(s)	229, 423
Cac8I	GCNNGC	2 cut(s)	147, 278
CfoI	GCGC	2 cut(s)	165, 364
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	304
Csp6I	GTAC	3 cut(s)	175, 181, 412
CviAII	CATG	1 cut(s)	409
CviJI	RGCY	8 cut(s)	61, 115, 158, 211, 228, 280, 305, 424
CviKI_1	RGCY	8 cut(s)	61, 115, 158, 211, 228, 280, 305, 424
CviQI	GTAC	3 cut(s)	175, 181, 412
DdeI	CTNAG	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	282
Eco88I	CYCGRG	2 cut(s)	166, 223
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	1 cut(s)	412
FaiI	YATR	3 cut(s)	26, 28, 410
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	1 cut(s)	408
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	8 cut(s)	22, 62, 88, 156, 212, 229, 392, 395
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	8 cut(s)	22, 62, 88, 156, 212, 229, 392, 395
GlaI	GCGC	2 cut(s)	164, 363
GluI	GCNGC	8 cut(s)	22, 62, 88, 156, 212, 229, 392, 395
HaeIII	GGCC	2 cut(s)	158, 305
HapII	CCGG	3 cut(s)	146, 208, 251
HhaI	GCGC	2 cut(s)	165, 364
Hin1II	CATG	1 cut(s)	412
Hin6I	GCGC	2 cut(s)	163, 362
HinP1I	GCGC	2 cut(s)	163, 362
HinfI	GANTC	5 cut(s)	70, 121, 197, 221, 379
HpaII	CCGG	3 cut(s)	146, 208, 251
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	181, 258
Hpy188I	TCNGA	6 cut(s)	75, 97, 126, 196, 235, 384
Hpy188III	TCNNGA	1 cut(s)	259
Hpy8I	GTNNAC	2 cut(s)	181, 258
HpyAV	CCTTC	3 cut(s)	70, 283, 295
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	2 cut(s)	108, 177
HpyCH4V	TGCA	4 cut(s)	214, 271, 397, 418
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 155, 211, 277
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	2 cut(s)	108, 177
Hsp92II	CATG	1 cut(s)	412
HspAI	GCGC	2 cut(s)	163, 362
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	8 cut(s)	129, 159, 221, 224, 264, 356, 383, 428
Lsp1109I	GCAGC	3 cut(s)	198, 215, 381
LweI	GCATC	1 cut(s)	322
MaeII	ACGT	2 cut(s)	108, 177
MbiI	CCGCTC	1 cut(s)	87
MhlI	GDGCHC	3 cut(s)	137, 207, 282
MluCI	AATT	2 cut(s)	98, 322
MlyI	GAGTC	2 cut(s)	79, 215
MmeI	TCCRAC	2 cut(s)	53, 75
MnlI	CCTC	2 cut(s)	97, 259
MreI	CGCCGGCG	1 cut(s)	145
MroNI	GCCGGC	1 cut(s)	145
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	3 cut(s)	146, 208, 251
MspR9I	CCNGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	4 cut(s)	61, 155, 211, 277
NaeI	GCCGGC	1 cut(s)	147
NciI	CCSGG	1 cut(s)	208
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	1 cut(s)	204
PaeR7I	CTCGAG	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	229
PdiI	GCCGGC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	121, 197, 379
PkrI	GCNGC	8 cut(s)	23, 63, 89, 157, 213, 230, 393, 396
PleI	GAGTC	2 cut(s)	78, 215
PpsI	GAGTC	2 cut(s)	78, 215
Ppu21I	YACGTR	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	304
PspXI	VCTCGAGB	1 cut(s)	223
PstI	CTGCAG	2 cut(s)	399, 420
RsaI	GTAC	3 cut(s)	176, 182, 413
RsaNI	GTAC	3 cut(s)	175, 181, 412
SatI	GCNGC	8 cut(s)	22, 62, 88, 156, 212, 229, 392, 395
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	2 cut(s)	79, 215
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	3 cut(s)	137, 207, 282
SetI	ASST	6 cut(s)	111, 180, 230, 243, 270, 417
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	2 cut(s)	395, 416
Sfr274I	CTCGAG	1 cut(s)	223
SgrAI	CRCCGGYG	1 cut(s)	145
SlaI	CTCGAG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	2 cut(s)	98, 322
StyD4I	CCNGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	2 cut(s)	111, 180
TaqI	TCGA	2 cut(s)	102, 224
TasI	AATT	2 cut(s)	98, 322
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	5 cut(s)	24, 64, 90, 158, 394
TfiI	GAWTC	3 cut(s)	121, 197, 379
TseI	GCWGC	3 cut(s)	211, 228, 394
TspDTI	ATGAA	1 cut(s)	397
TspGWI	ACGGA	1 cut(s)	233
XapI	RAATTY	1 cut(s)	98
XhoI	CTCGAG	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.