MD10G1266000.v1.1

purine permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0028175
Physical Location & Seq
Reverse (-)
35911122 .. 35911406
285 bp
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UTR
Exon/CDS
Intron
MD10G1266000.v1.1.491

Sequence Viewer

Length: 285 bp
ATGGTAATCCAAATATGTGTTTCATACCAGTTAATTTCTCAGCCCAGAGATTTTAGCCGGTGGTGCGTATATCACCATCTAACGCTATTCATTGGATTGATTTTTGAGGTGTCTTCTTTATTCTCCAATGTCATAAGTGCTTCCGGCTTGCCTTTCATTCCAGTTCTAGCTGTAAAGCCTGTAATCTTCTTCAATGATAACATGGACGGATTAAAGGTTATTTCCACCGTGTTGGCCCTCTGGGGCATTGCTTCATATATATGTCTATCAGCACTACCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUNUT

Protein Analysis

95

Amino Acids

10.51

Weight (kDa)

7.75

Isoelectric Point (pI)

30.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUNUT PF16913 30 - 87 2e-15 Purine nucleobase transmembrane transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028175)

Species Orthologous Gene IDs
malus_domestica MD10G1266000.v1.1
pyrus_communis pycom10g22180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 193
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
AoxI GGCC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 105
BccI CCATC 1 cut(s) 84
BfaI CTAG 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 2 cut(s) 28, 161
Bse3DI GCAATG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 2 cut(s) 28, 161
BshFI GGCC 1 cut(s) 236
BsiSI CCGG 2 cut(s) 58, 144
BsnI GGCC 1 cut(s) 236
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 2 cut(s) 28, 161
BssAI RCCGGY 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstV2I GAAGAC 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 232
BsuRI GGCC 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 235
CviAII CATG 1 cut(s) 202
CviJI RGCY 6 cut(s) 43, 57, 147, 170, 178, 236
CviKI_1 RGCY 6 cut(s) 43, 57, 147, 170, 178, 236
DdeI CTNAG 1 cut(s) 39
FaeI CATG 1 cut(s) 205
FaiI YATR 9 cut(s) 16, 25, 70, 134, 203, 256, 258, 260, 262
FatI CATG 1 cut(s) 201
FspBI CTAG 1 cut(s) 167
HaeIII GGCC 1 cut(s) 236
HapII CCGG 2 cut(s) 58, 144
Hin1II CATG 1 cut(s) 205
HpaII CCGG 2 cut(s) 58, 144
HphI GGTGA 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 1 cut(s) 205
LpnPI CCDG 7 cut(s) 41, 58, 71, 157, 174, 192, 226
MaeI CTAG 1 cut(s) 167
MboII GAAGA 3 cut(s) 105, 178, 181
MluCI AATT 1 cut(s) 33
MnlI CCTC 2 cut(s) 100, 248
MseI TTAA 2 cut(s) 32, 212
MslI CAYNNNNRTG 1 cut(s) 259
MspI CCGG 2 cut(s) 58, 144
MwoI GCNNNNNNNGC 1 cut(s) 63
NlaIII CATG 1 cut(s) 205
PspPI GGNCC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 259
SaqAI TTAA 2 cut(s) 32, 212
Sau96I GGNCC 1 cut(s) 235
SetI ASST 4 cut(s) 111, 172, 219, 280
SmiMI CAYNNNNRTG 1 cut(s) 259
Sse9I AATT 1 cut(s) 33
SspMI CTAG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 280
TasI AATT 1 cut(s) 33
Tru1I TTAA 2 cut(s) 32, 212
Tru9I TTAA 2 cut(s) 32, 212
TspDTI ATGAA 4 cut(s) 12, 79, 145, 243
TspGWI ACGGA 1 cut(s) 222
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.