MD10G1298800.v1.1

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0024214
Physical Location & Seq
Reverse (-)
38601941 .. 38602225
285 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1298800.v1.1.491

Sequence Viewer

Length: 285 bp
ATGCAGGGCAGCCGATCAAAATCGGAGAAGCAAGAAGCTAAGAAGCAGCTCCGACAAAACCCTTATGCGGTCCTCGGCCTCAATAGGAATTCCACCAACCAGGAAATCAAAAGTGCTTACCGGAAAATGGCTCTCAAGTACCATCCTGACAAAAATGCTAATGACTCTAAAACAGCTGATATCTTCAAGAAGGTCATGTTTTCTTATAATATATTATTTGATCCAGACAAACGGCGTCGGTATGACACTGCCGGCTTTCAGGCTGTTGAAACAGAAAGCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

95

Amino Acids

10.96

Weight (kDa)

9.84

Isoelectric Point (pI)

59.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 20 - 82 1.6e-23 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024214)

Species Orthologous Gene IDs
malus_domestica MD10G1298800.v1.1
rosa_chinensis RchiOBHm_Chr3g0475551
rosa_rugosa Rorug01G0401500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
AciI CCGC 1 cut(s) 68
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 235
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 67, 127
AgsI TTSAA 2 cut(s) 187, 269
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 3 cut(s) 38, 49, 176
AluI AGCT 3 cut(s) 38, 49, 176
AlwI GGATC 1 cut(s) 215
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 9, 46
ApoI RAATTY 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 70
AvaII GGWCC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 21, 58
BccI CCATC 1 cut(s) 150
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 283
BisI GCNGC 2 cut(s) 10, 47
BlsI GCNGC 2 cut(s) 11, 48
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 119
BsaBI GATNNNNATC 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 127
Bse118I RCCGGY 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 19
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 19
BseLI CCNNNNNNNGG 2 cut(s) 67, 127
BseXI GCAGC 2 cut(s) 21, 58
BshFI GGCC 1 cut(s) 78
BsiSI CCGG 2 cut(s) 121, 252
BslI CCNNNNNNNGG 2 cut(s) 67, 127
BsnI GGCC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 14, 220
BspACI CCGC 1 cut(s) 68
BspANI GGCC 1 cut(s) 78
BspPI GGATC 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 2 cut(s) 14, 220
BssNI GRCGYC 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 2 cut(s) 17, 223
BstMBI GATC 2 cut(s) 14, 220
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 21, 58
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 70
CseI GACGC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 139
CviAII CATG 1 cut(s) 196
CviJI RGCY 9 cut(s) 12, 38, 49, 78, 131, 176, 255, 263, 279
CviKI_1 RGCY 9 cut(s) 12, 38, 49, 78, 131, 176, 255, 263, 279
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 1 cut(s) 39
DpnI GATC 2 cut(s) 16, 222
DpnII GATC 2 cut(s) 14, 220
Eco32I GATATC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 181
FaeI CATG 1 cut(s) 199
FaiI YATR 5 cut(s) 66, 197, 207, 212, 243
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 10, 47
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 2 cut(s) 10, 47
FspBI CTAG 1 cut(s) 283
GluI GCNGC 2 cut(s) 10, 47
HaeIII GGCC 1 cut(s) 78
HapII CCGG 2 cut(s) 121, 252
HgaI GACGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 235
Hin1II CATG 1 cut(s) 199
HinfI GANTC 1 cut(s) 164
HpaII CCGG 2 cut(s) 121, 252
Hpy188I TCNGA 2 cut(s) 25, 53
Hpy188III TCNNGA 3 cut(s) 146, 187, 224
Hpy99I CGWCG 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 235
Hsp92II CATG 1 cut(s) 199
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Kzo9I GATC 2 cut(s) 14, 220
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 7 cut(s) 86, 113, 134, 159, 237, 245, 265
Lsp1109I GCAGC 2 cut(s) 21, 58
MaeI CTAG 1 cut(s) 283
MalI GATC 2 cut(s) 16, 222
MboI GATC 2 cut(s) 14, 220
MboII GAAGA 1 cut(s) 175
MluCI AATT 1 cut(s) 88
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 2 cut(s) 83, 89
MroNI GCCGGC 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 2 cut(s) 121, 252
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
NaeI GCCGGC 1 cut(s) 253
NdeII GATC 2 cut(s) 14, 220
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 1 cut(s) 199
NmeAIII GCCGAG 1 cut(s) 54
PdiI GCCGGC 1 cut(s) 253
PkrI GCNGC 2 cut(s) 11, 48
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PsiI TTATAA 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspPI GGNCC 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SatI GCNGC 2 cut(s) 10, 47
Sau3AI GATC 2 cut(s) 14, 220
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 101
SetI ASST 4 cut(s) 40, 51, 178, 195
SinI GGWCC 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 88
SsiI CCGC 1 cut(s) 68
SspMI CTAG 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 99
TasI AATT 1 cut(s) 88
TscAI CASTG 1 cut(s) 253
TseI GCWGC 2 cut(s) 9, 46
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 88
XspI CTAG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.