MD10G1318900.v1.1

Signal recognition particle 43 kDa protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
40126364 .. 40127069
706 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1318900.v1.1.491

Sequence Viewer

Length: 270 bp
ATGTGGTTTCAGCAATTCCCAGAGTTTCAACCAAACCCGTTGTATATTTCGGGAGTCTTATGCTGGAGTCTATGTGCCAACTCTTGCTTCTCAAATTGCAGAAGTTTGTACGAGAGCCCGTGGTGGACCGCCGCCAAAAACCCATACAAATCTGCTCTGAGTCAGCTCATTGCAGTTGAGTACGACTCACGCGACATCTACCGCCACCGCCTCCAGCTCATTGGCTCCACACTTTCTCAGGTTTTGGATTTAGCATTTGATTTTCTTTGA

Protein Analysis

90

Amino Acids

10.39

Weight (kDa)

5.59

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028212)

Species Orthologous Gene IDs
malus_domestica MD10G1318900.v1.1
pyrus_communis pycom04g00210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 192
AciI CCGC 4 cut(s) 129, 132, 202, 208
AfaI GTAC 2 cut(s) 110, 182
AgsI TTSAA 1 cut(s) 29
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 2 cut(s) 166, 217
AluI AGCT 2 cut(s) 166, 217
AspS9I GGNCC 1 cut(s) 126
AvaII GGWCC 1 cut(s) 126
BanII GRGCYC 1 cut(s) 119
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 226
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpmI CTGGAG 2 cut(s) 85, 197
BsaJI CCNNGG 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bse3DI GCAATG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 149, 251
Bsh1236I CGCG 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 119
BspACI CCGC 4 cut(s) 129, 132, 202, 208
BspCNI CTCAG 2 cut(s) 150, 250
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 158, 237
BstDSI CCRYGG 1 cut(s) 119
BstFNI CGCG 1 cut(s) 192
BstUI CGCG 1 cut(s) 192
BstXI CCANNNNNNTGG 1 cut(s) 221
BtgI CCRYGG 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 126
Csp6I GTAC 2 cut(s) 109, 181
CviJI RGCY 4 cut(s) 117, 166, 217, 225
CviKI_1 RGCY 4 cut(s) 117, 166, 217, 225
CviQI GTAC 2 cut(s) 109, 181
DdeI CTNAG 2 cut(s) 158, 237
Eco24I GRGCYC 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 119
FaiI YATR 4 cut(s) 45, 61, 73, 145
Fnu4HI GCNGC 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
GsuI CTGGAG 2 cut(s) 85, 197
HinfI GANTC 4 cut(s) 54, 67, 160, 185
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 1 cut(s) 51
Hpy8I GTNNAC 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 99, 173
HpyF3I CTNAG 2 cut(s) 158, 237
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 4 cut(s) 33, 49, 224, 227
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 2 cut(s) 14, 94
MlyI GAGTC 4 cut(s) 63, 76, 169, 179
MnlI CCTC 1 cut(s) 221
MvnI CGCG 1 cut(s) 192
NlaIV GGNNCC 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 4 cut(s) 62, 75, 168, 179
PpsI GAGTC 4 cut(s) 62, 75, 168, 179
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 126
RsaI GTAC 2 cut(s) 110, 182
RsaNI GTAC 2 cut(s) 109, 181
SatI GCNGC 1 cut(s) 132
Sau96I GGNCC 1 cut(s) 126
SchI GAGTC 4 cut(s) 63, 76, 169, 179
SduI GDGCHC 1 cut(s) 119
SetI ASST 3 cut(s) 168, 219, 243
SinI GGWCC 1 cut(s) 126
Sse9I AATT 2 cut(s) 14, 94
SsiI CCGC 4 cut(s) 129, 132, 202, 208
TasI AATT 2 cut(s) 14, 94
TauI GCSGC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.