pycom04g00210

Signal recognition particle 43 kDa protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
166490 .. 167315
826 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g00210.2

Sequence Viewer

Length: 219 bp
ATGGCCGAGTATGAGAGCCCGTGGTGGACCGCCACCAAAAAACCTGACGAATCCGCTCTGAGTCAACTTATAGCAGTCGAGAACAACTCGCGCTATGTCGACTGTCACCGCCACCGACTCATCGGCTCCACACATTCTCTAGCAATTGAAGTTGAATATGGAGAAGGTTTTGACACATTTAGCCCTGTTGGACTCTCAAGTTTGATGTGGAGTTTTTGA

Protein Analysis

73

Amino Acids

8.18

Weight (kDa)

4.9

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028212)

Species Orthologous Gene IDs
malus_domestica MD10G1318900.v1.1
pyrus_communis pycom04g00210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 99
AccII CGCG 1 cut(s) 91
AciI CCGC 3 cut(s) 30, 54, 109
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 2 cut(s) 149, 155
AoxI GGCC 1 cut(s) 3
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 27
BanII GRGCYC 1 cut(s) 20
BfaI CTAG 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 71, 103
BpuEI CTTGAG 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 5
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 20
BspACI CCGC 3 cut(s) 30, 54, 109
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 51
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 127
BsrBI CCGCTC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 59
BstDSI CCRYGG 1 cut(s) 20
BstFNI CGCG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 93
BstUI CGCG 1 cut(s) 91
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 20
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 27
CviJI RGCY 4 cut(s) 5, 18, 126, 183
CviKI_1 RGCY 4 cut(s) 5, 18, 126, 183
DdeI CTNAG 1 cut(s) 59
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 20
FaiI YATR 4 cut(s) 12, 71, 96, 159
FblI GTMKAC 1 cut(s) 99
FriOI GRGCYC 1 cut(s) 20
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 92
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 93
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 2 cut(s) 65, 100
HindII GTYRAC 2 cut(s) 65, 100
HinfI GANTC 4 cut(s) 50, 61, 117, 192
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 3 cut(s) 27, 65, 100
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 3 cut(s) 27, 65, 100
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 59
HspAI GCGC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 2 cut(s) 57, 198
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 104
MbiI CCGCTC 1 cut(s) 56
MfeI CAATTG 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 1 cut(s) 144
MlyI GAGTC 3 cut(s) 70, 111, 186
MmeI TCCRAC 1 cut(s) 169
MunI CAATTG 1 cut(s) 144
MvnI CGCG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 127
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 50
PleI GAGTC 3 cut(s) 69, 111, 186
PpsI GAGTC 3 cut(s) 69, 111, 186
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 27
SalI GTCGAC 1 cut(s) 98
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 3 cut(s) 70, 111, 186
SduI GDGCHC 1 cut(s) 20
SetI ASST 2 cut(s) 46, 169
SinI GGWCC 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 1 cut(s) 144
SsiI CCGC 3 cut(s) 30, 54, 109
SspMI CTAG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 2 cut(s) 78, 99
TasI AATT 1 cut(s) 144
TfiI GAWTC 1 cut(s) 50
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.