Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0028909

Physical Location & Seq

Genomic Coordinates Forward (+)

761999 .. 762887

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1009400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAACACCGAGAAAATGGACTTAACCATCAAAGTATGCAGATCATTTTCTTCCACTGGTGAAGCGTCTAGCGTTGATGATGACCTTTGGCTCGCTTCCCGCACTTATTATAGACCTGTCATTGAATGCTGTTGGGGCACAGAGCTTGCTTCGTCCTACATCATGGGAAGTCTGCTGCAGCCGCAAGCTTTTGGAGCATTTAGCACAAAGTCCATGAAAACAGGCTTTGTCATCTTTGATGAACATGGAATTCCTTATCCAGAAGAGCAAGCTTGTGTCGGGGAAGTGAGTTTGTTTCCGCTATTAACGGGAGTGGCTGACAGACTGCCAAATGCTGCTCATGAAAAGGTTTACTTCAAGGGAATGCCAATATACAATGGAACGGTACGATTAGAACTACATGTCTTTCAGTACTTGAACCTCTTGATATGCTTAAATATGAACTTATCGATGTTTTTGAATCGCCTGCAACTTAGGAGATATGGAGATATAGTTAAAAGAACTGTTGGAGGTTCAATTCCTCTCATAGACATACTTGAACCTCTTCATATGCTTAAATGTGAACTTAAATTTATTCAATTCTCTCATTCTGATTACGGATTAGTAAACGAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010817 GO:0042445 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

206

Amino Acids

23.18

Weight (kDa)

5.73

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028909)

Species	Orthologous Gene IDs
malus_domestica	MD11G1009400.v1.1
pyrus_communis	pycom11g00600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	100, 182, 299
AcsI	RAATTY	2 cut(s)	249, 569
AfaI	GTAC	2 cut(s)	387, 413
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	7 cut(s)	125, 358, 418, 460, 516, 539, 578
AluBI	AGCT	3 cut(s)	145, 188, 272
AluI	AGCT	3 cut(s)	145, 188, 272
ApeKI	GCWGC	3 cut(s)	175, 178, 335
ApoI	RAATTY	2 cut(s)	249, 569
Asp700I	GAANNNNTTC	1 cut(s)	543
AsuHPI	GGTGA	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	162, 190, 322
BccI	CCATC	1 cut(s)	35
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	176
BisI	GCNGC	4 cut(s)	176, 179, 182, 336
BlsI	GCNGC	4 cut(s)	177, 180, 183, 337
BmcAI	AGTACT	1 cut(s)	413
Bsa29I	ATCGAT	1 cut(s)	449
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bse1I	ACTGG	1 cut(s)	61
BseCI	ATCGAT	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	162, 190, 322
BshVI	ATCGAT	1 cut(s)	449
BsmI	GAATGC	2 cut(s)	131, 369
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	41
BspACI	CCGC	3 cut(s)	100, 182, 299
BspDI	ATCGAT	1 cut(s)	449
BspHI	TCATGA	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	180
BspQI	GCTCTTC	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	385, 505
Bst6I	CTCTTC	2 cut(s)	258, 549
BstC8I	GCNNGC	5 cut(s)	93, 147, 186, 270, 467
BstDEI	CTNAG	1 cut(s)	473
BstKTI	GATC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 181, 194
BstNSI	RCATGY	1 cut(s)	404
BstSFI	CTRYAG	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	162, 190, 322
Bsu15I	ATCGAT	1 cut(s)	449
BsuTUI	ATCGAT	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	5 cut(s)	93, 147, 186, 270, 467
CciI	TCATGA	1 cut(s)	340
ClaI	ATCGAT	1 cut(s)	449
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	386, 412
CviAII	CATG	5 cut(s)	163, 214, 245, 341, 401
CviJI	RGCY	7 cut(s)	91, 145, 181, 188, 225, 272, 317
CviKI_1	RGCY	7 cut(s)	91, 145, 181, 188, 225, 272, 317
CviQI	GTAC	2 cut(s)	386, 412
DdeI	CTNAG	1 cut(s)	473
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
Eam1104I	CTCTTC	2 cut(s)	258, 549
EarI	CTCTTC	2 cut(s)	258, 549
EcoRI	GAATTC	1 cut(s)	249
FaeI	CATG	5 cut(s)	166, 217, 248, 344, 404
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	5 cut(s)	162, 213, 244, 340, 400
FauI	CCCGC	1 cut(s)	107
FauNDI	CATATG	1 cut(s)	549
Fnu4HI	GCNGC	4 cut(s)	176, 179, 182, 336
Fsp4HI	GCNGC	4 cut(s)	176, 179, 182, 336
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	4 cut(s)	176, 179, 182, 336
HgaI	GACGC	1 cut(s)	54
Hin1II	CATG	5 cut(s)	166, 217, 248, 344, 404
HindIII	AAGCTT	2 cut(s)	186, 270
HinfI	GANTC	2 cut(s)	460, 611
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	3 cut(s)	352, 563, 607
Hpy188I	TCNGA	1 cut(s)	592
Hpy188III	TCNNGA	3 cut(s)	260, 341, 424
Hpy8I	GTNNAC	3 cut(s)	352, 563, 607
HpyCH4III	ACNGT	2 cut(s)	385, 505
HpyCH4V	TGCA	3 cut(s)	39, 178, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 181, 194
HpyF3I	CTNAG	1 cut(s)	473
Hsp92II	CATG	5 cut(s)	166, 217, 248, 344, 404
Kzo9I	GATC	1 cut(s)	41
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	5 cut(s)	42, 129, 207, 273, 479
Lsp1109I	GCAGC	3 cut(s)	162, 190, 322
MaeI	CTAG	1 cut(s)	69
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	3 cut(s)	42, 275, 536
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	4 cut(s)	249, 516, 569, 578
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	4 cut(s)	431, 503, 531, 552
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	6 cut(s)	23, 305, 434, 495, 555, 567
Mva1269I	GAATGC	2 cut(s)	131, 369
MwoI	GCNNNNNNNGC	3 cut(s)	135, 181, 194
NdeI	CATATG	1 cut(s)	549
NdeII	GATC	1 cut(s)	41
NlaIII	CATG	5 cut(s)	166, 217, 248, 344, 404
NspI	RCATGY	1 cut(s)	404
PagI	TCATGA	1 cut(s)	340
PciI	ACATGT	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	258
PctI	GAATGC	2 cut(s)	131, 369
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	460
PkrI	GCNGC	4 cut(s)	177, 180, 183, 337
PscI	ACATGT	1 cut(s)	400
PstI	CTGCAG	1 cut(s)	180
RsaI	GTAC	2 cut(s)	387, 413
RsaNI	GTAC	2 cut(s)	386, 412
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	6 cut(s)	23, 305, 434, 495, 555, 567
SatI	GCNGC	4 cut(s)	176, 179, 182, 336
Sau3AI	GATC	1 cut(s)	41
ScaI	AGTACT	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	9 cut(s)	87, 118, 147, 190, 274, 351, 423, 514, 544
SfcI	CTRYAG	1 cut(s)	176
Sse9I	AATT	4 cut(s)	249, 516, 569, 578
SsiI	CCGC	3 cut(s)	100, 182, 299
SspMI	CTAG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	385, 505
TaqI	TCGA	1 cut(s)	449
TasI	AATT	4 cut(s)	249, 516, 569, 578
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	6 cut(s)	23, 305, 434, 495, 555, 567
Tru9I	TTAA	6 cut(s)	23, 305, 434, 495, 555, 567
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	3 cut(s)	175, 178, 335
TspDTI	ATGAA	6 cut(s)	17, 230, 255, 357, 455, 536
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	1 cut(s)	61
XapI	RAATTY	2 cut(s)	249, 569
XceI	RCATGY	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	543
XspI	CTAG	1 cut(s)	69
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.