Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0028909

Physical Location & Seq

Genomic Coordinates Forward (+)

453614 .. 454703

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAATACCGAGAAAATGGACTTAACCATCAATGTATGCAGATCATTTTCTTCCACTGGTGAAGTGTCTAGCGTTGATGATGACCTTTGGCTCGCTTCCCGCGCTTATTATAGACCCGTCATTGAATGTTGTTGGGGCACAGAGCTTGCTTCGTCCTACATCATGGGAAGTCTGCTGCAGCCGCAAGCTTTAGGAGAATTTAGCACAAAGTCGATGAAAACAGGCTTTGTTATCTTTGATGAACATGGAATTCCTTATGGAAAAAAGCAAGCTTGTGTCCGGGAAGTGAGTTTGTTTCCGCTATTAACGGGAGCGACTGACATACTGCCAAATGCTGCTCATGAAAAGGTTTACTTCAAGGGAATGCCAATGTACAATGGAACGGTACGATTTGAACTACTTGTCTTTCAGTACTTGAACCTCTTGATATGCTTAAATATGAACCTATCGATGTTTTTGAATCGCCTGCAACTTAGGAGATATGGAGACATAGTTAAAAGAACCGTTGGAGGTTCAGTTCCTCTCATAGACATACTTGAACCTCTTCATATGCTTAAATTGATCAACAACATGATTAGTACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010817 GO:0042445 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

196

Amino Acids

22.02

Weight (kDa)

6.82

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028909)

Species	Orthologous Gene IDs
malus_domestica	MD11G1009400.v1.1
pyrus_communis	pycom11g00600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	102
AciI	CCGC	3 cut(s)	100, 182, 299
AcsI	RAATTY	2 cut(s)	197, 249
AfaI	GTAC	4 cut(s)	374, 387, 413, 580
AgsI	TTSAA	6 cut(s)	125, 358, 395, 418, 460, 539
AloI	GAACNNNNNNTCC	2 cut(s)	501, 533
AluBI	AGCT	3 cut(s)	145, 188, 272
AluI	AGCT	3 cut(s)	145, 188, 272
Alw26I	GTCTC	1 cut(s)	480
ApeKI	GCWGC	3 cut(s)	175, 178, 335
ApoI	RAATTY	2 cut(s)	197, 249
Asp700I	GAANNNNTTC	1 cut(s)	543
AspLEI	GCGC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	162, 190, 322
BccI	CCATC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	480
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	176
BisI	GCNGC	4 cut(s)	176, 179, 182, 336
BlsI	GCNGC	4 cut(s)	177, 180, 183, 337
BmcAI	AGTACT	2 cut(s)	413, 580
Bme1390I	CCNGG	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	449
BsaXI	ACNNNNNCTCC	4 cut(s)	477, 501, 507, 531
Bse1I	ACTGG	1 cut(s)	61
BseCI	ATCGAT	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	162, 190, 322
Bsh1236I	CGCG	1 cut(s)	102
BshVI	ATCGAT	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	480
BsmI	GAATGC	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	2 cut(s)	41, 561
BspACI	CCGC	3 cut(s)	100, 182, 299
BspDI	ATCGAT	1 cut(s)	449
BspFNI	CGCG	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	61
BssMI	GATC	2 cut(s)	41, 561
Bst4CI	ACNGT	2 cut(s)	385, 505
Bst6I	CTCTTC	1 cut(s)	549
BstAUI	TGTACA	1 cut(s)	372
BstC8I	GCNNGC	5 cut(s)	93, 147, 186, 270, 467
BstDEI	CTNAG	1 cut(s)	473
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	2 cut(s)	44, 564
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	2 cut(s)	41, 561
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 181
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	140
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	3 cut(s)	162, 190, 322
Bsu15I	ATCGAT	1 cut(s)	449
BsuTUI	ATCGAT	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	5 cut(s)	93, 147, 186, 270, 467
CciI	TCATGA	1 cut(s)	340
CfoI	GCGC	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	449
Csp6I	GTAC	4 cut(s)	373, 386, 412, 579
CviAII	CATG	4 cut(s)	163, 245, 341, 571
CviJI	RGCY	6 cut(s)	91, 145, 181, 188, 225, 272
CviKI_1	RGCY	6 cut(s)	91, 145, 181, 188, 225, 272
CviQI	GTAC	4 cut(s)	373, 386, 412, 579
DdeI	CTNAG	1 cut(s)	473
DpnI	GATC	2 cut(s)	43, 563
DpnII	GATC	2 cut(s)	41, 561
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
EcoRI	GAATTC	1 cut(s)	249
FaeI	CATG	4 cut(s)	166, 248, 344, 574
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	4 cut(s)	162, 244, 340, 570
FauI	CCCGC	1 cut(s)	107
FauNDI	CATATG	1 cut(s)	549
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	4 cut(s)	176, 179, 182, 336
Fsp4HI	GCNGC	4 cut(s)	176, 179, 182, 336
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	4 cut(s)	176, 179, 182, 336
HapII	CCGG	1 cut(s)	280
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	4 cut(s)	166, 248, 344, 574
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HindIII	AAGCTT	2 cut(s)	186, 270
HinfI	GANTC	1 cut(s)	460
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188III	TCNNGA	2 cut(s)	341, 424
Hpy8I	GTNNAC	1 cut(s)	352
HpyCH4III	ACNGT	2 cut(s)	385, 505
HpyCH4V	TGCA	3 cut(s)	39, 178, 469
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 181
HpyF3I	CTNAG	1 cut(s)	473
Hsp92II	CATG	4 cut(s)	166, 248, 344, 574
HspAI	GCGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	2 cut(s)	41, 561
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	4 cut(s)	42, 207, 293, 479
Lsp1109I	GCAGC	3 cut(s)	162, 190, 322
MaeI	CTAG	1 cut(s)	69
MalI	GATC	2 cut(s)	43, 563
MboI	GATC	2 cut(s)	41, 561
MboII	GAAGA	2 cut(s)	42, 536
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	3 cut(s)	197, 249, 557
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	4 cut(s)	431, 503, 531, 552
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	5 cut(s)	23, 305, 434, 495, 555
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	369
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	101, 181
NciI	CCSGG	1 cut(s)	281
NdeI	CATATG	1 cut(s)	549
NdeII	GATC	2 cut(s)	41, 561
NlaIII	CATG	4 cut(s)	166, 248, 344, 574
PagI	TCATGA	1 cut(s)	340
PctI	GAATGC	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	460
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	4 cut(s)	177, 180, 183, 337
PstI	CTGCAG	1 cut(s)	180
RsaI	GTAC	4 cut(s)	374, 387, 413, 580
RsaNI	GTAC	4 cut(s)	373, 386, 412, 579
SaqAI	TTAA	5 cut(s)	23, 305, 434, 495, 555
SatI	GCNGC	4 cut(s)	176, 179, 182, 336
Sau3AI	GATC	2 cut(s)	41, 561
ScaI	AGTACT	2 cut(s)	413, 580
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	9 cut(s)	87, 147, 190, 274, 351, 423, 447, 514, 544
SfcI	CTRYAG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	197, 249, 557
SsiI	CCGC	3 cut(s)	100, 182, 299
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	385, 505
TaqI	TCGA	2 cut(s)	212, 449
TasI	AATT	3 cut(s)	197, 249, 557
TatI	WGTACW	3 cut(s)	372, 411, 578
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	5 cut(s)	23, 305, 434, 495, 555
Tru9I	TTAA	5 cut(s)	23, 305, 434, 495, 555
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	3 cut(s)	175, 178, 335
TspDTI	ATGAA	6 cut(s)	17, 230, 255, 357, 455, 536
TspRI	CASTG	1 cut(s)	61
XapI	RAATTY	2 cut(s)	197, 249
XmnI	GAANNNNTTC	1 cut(s)	543
XspI	CTAG	1 cut(s)	69
ZrmI	AGTACT	2 cut(s)	413, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.