Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0028929

Physical Location & Seq

Genomic Coordinates Forward (+)

2672813 .. 2673597

Gene Structure 785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1030700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAAATGGATGGAGGTGAGAAAACAGAAGAGCTTCAAAGCAGAGCTGGTGGCAGGGCCAAGAGAGTTTAGTTACAAGGAGCTGAAATCTGCCACAGGAGTGTTTCATCCCAGCACCATTTCTGCGGTGAAAAGATCCAAGCATTCCCATGAAGGTAAAACCGAATTCCTCTCTGAGTTGTCGATTATTGCTTGCTTGCGTTACAAGAATTTAGTTCACCTTCAAGGCTGGTGCGTTGAGAAGGGTGAATTGCTTCTTGTTTACGATTTCATGCCTAATGGGAACCTCGAAAAGGCGCTGTACCAAGAATCTGTACAACGAACTTTGTTAGATTGGTCTCGGAGACTGAATATTGCGGTCGGATTGGCGTCTGTTTTGGCATATCTGCACCAGGAATGTGAGCAGCAGGTCATCCACAGAGACATAAAGACTGGAAATGTGTTGCTTTACGGGAATTTAAACGCAAGGCTCAGTGATTTCGGGCTTGCAAAGCTCATGGATCACGATAAAAGCCCTGTTTCCACACTGACAGCGGCAACAATGGGGTACCTTGCGCCTGAGTATCTTCAATATGGAAAAGCCACCGAAAAGACTGATGGTTTTAGCTATGGTGTGGTGATCCTTGAAGTGGCGTGTGGAAGGAGGCCAATAGAAAAAGAGCCGGGAAGTGAGAAGGCGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

228

Amino Acids

25.51

Weight (kDa)

8.76

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	39 - 224	2.6e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	42 - 219	1.1e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028929)

Species	Orthologous Gene IDs
malus_domestica	MD11G1030700.v1.1
pyrus_communis	pycom11g02490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
Acc65I	GGTACC	1 cut(s)	546
AccB1I	GGYRCC	1 cut(s)	546
AciI	CCGC	4 cut(s)	125, 356, 533, 677
AclWI	GGATC	3 cut(s)	129, 507, 613
AcsI	RAATTY	3 cut(s)	164, 208, 454
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	3 cut(s)	302, 315, 548
AfiI	CCNNNNNNNGG	2 cut(s)	292, 628
AgsI	TTSAA	4 cut(s)	37, 224, 569, 626
AjnI	CCWGG	1 cut(s)	390
AleI	CACNNNNGTG	1 cut(s)	98
AluBI	AGCT	5 cut(s)	33, 46, 82, 493, 606
AluI	AGCT	5 cut(s)	33, 46, 82, 493, 606
Alw26I	GTCTC	3 cut(s)	337, 342, 414
AlwI	GGATC	3 cut(s)	129, 507, 613
AoxI	GGCC	2 cut(s)	56, 644
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	3 cut(s)	164, 208, 454
Asp700I	GAANNNNTTC	2 cut(s)	32, 252
Asp718I	GGTACC	1 cut(s)	546
AspLEI	GCGC	2 cut(s)	298, 556
AspS9I	GGNCC	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	663
AsuHPI	GGTGA	5 cut(s)	28, 139, 209, 257, 628
BanI	GGYRCC	1 cut(s)	546
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	2 cut(s)	4, 590
BciT130I	CCWGG	1 cut(s)	392
BcnI	CCSGG	1 cut(s)	663
BcoDI	GTCTC	3 cut(s)	337, 342, 414
BfoI	RGCGCY	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	397
BisI	GCNGC	2 cut(s)	404, 534
BlsI	GCNGC	2 cut(s)	405, 535
Bme1390I	CCNGG	2 cut(s)	392, 663
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	2 cut(s)	284, 548
BmrFI	CCNGG	2 cut(s)	392, 663
BpuMI	CCSGG	1 cut(s)	663
BsaHI	GRCGYC	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 628
Bse1I	ACTGG	1 cut(s)	436
BseBI	CCWGG	1 cut(s)	392
BseGI	GGATG	3 cut(s)	15, 106, 411
BseLI	CCNNNNNNNGG	2 cut(s)	292, 628
BseMII	CTCAG	3 cut(s)	165, 484, 549
BseNI	ACTGG	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	415
BseYI	CCCAGC	1 cut(s)	110
BsgI	GTGCAG	1 cut(s)	371
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	58, 646
BshNI	GGYRCC	1 cut(s)	546
BsiEI	CGRYCG	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	662
BslI	CCNNNNNNNGG	2 cut(s)	292, 628
BsmAI	GTCTC	3 cut(s)	337, 342, 414
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	58, 646
Bso31I	GGTCTC	1 cut(s)	342
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	134, 499, 618
BspACI	CCGC	4 cut(s)	125, 356, 533, 677
BspANI	GGCC	2 cut(s)	58, 646
BspCNI	CTCAG	3 cut(s)	166, 483, 550
BspLI	GGNNCC	2 cut(s)	284, 548
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	3 cut(s)	129, 507, 613
BspQI	GCTCTTC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	546
BspTNI	GGTCTC	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	436
BssMI	GATC	3 cut(s)	134, 499, 618
BssNI	GRCGYC	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	392
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	313
BstC8I	GCNNGC	3 cut(s)	193, 197, 486
BstDEI	CTNAG	3 cut(s)	174, 470, 558
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstF5I	GGATG	3 cut(s)	15, 106, 411
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	2 cut(s)	298, 556
BstKTI	GATC	3 cut(s)	137, 502, 621
BstMAI	GTCTC	3 cut(s)	337, 342, 414
BstMBI	GATC	3 cut(s)	134, 499, 618
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstNI	CCWGG	1 cut(s)	392
BstSCI	CCNGG	2 cut(s)	390, 661
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	58, 646
BtsCI	GGATG	3 cut(s)	15, 106, 411
BtsIMutI	CAGTG	2 cut(s)	478, 524
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	3 cut(s)	193, 197, 486
CfoI	GCGC	2 cut(s)	298, 556
Cfr13I	GGNCC	1 cut(s)	56
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	3 cut(s)	301, 314, 547
CviAII	CATG	3 cut(s)	149, 271, 496
CviQI	GTAC	3 cut(s)	301, 314, 547
DdeI	CTNAG	3 cut(s)	174, 470, 558
DpnI	GATC	3 cut(s)	136, 501, 620
DpnII	GATC	3 cut(s)	134, 499, 618
DraI	TTTAAA	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	342
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	390
FaeI	CATG	3 cut(s)	152, 274, 499
FaiI	YATR	7 cut(s)	150, 272, 382, 425, 497, 573, 609
FatI	CATG	3 cut(s)	148, 270, 495
FauI	CCCGC	1 cut(s)	670
Fnu4HI	GCNGC	2 cut(s)	404, 534
FokI	GGATG	3 cut(s)	22, 93, 398
Fsp4HI	GCNGC	2 cut(s)	404, 534
GlaI	GCGC	2 cut(s)	297, 555
GluI	GCNGC	2 cut(s)	404, 534
GsaI	CCCAGC	1 cut(s)	114
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	58, 646
HapII	CCGG	1 cut(s)	662
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	2 cut(s)	298, 556
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	3 cut(s)	152, 274, 499
Hin6I	GCGC	2 cut(s)	296, 554
HinP1I	GCGC	2 cut(s)	296, 554
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	1 cut(s)	662
HphI	GGTGA	5 cut(s)	28, 139, 209, 257, 628
Hpy166II	GTNNAC	2 cut(s)	217, 262
Hpy188I	TCNGA	3 cut(s)	175, 342, 362
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	2 cut(s)	217, 262
HpyAV	CCTTC	5 cut(s)	146, 230, 235, 633, 667
HpyCH4V	TGCA	2 cut(s)	388, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	3 cut(s)	174, 470, 558
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	3 cut(s)	152, 274, 499
HspAI	GCGC	2 cut(s)	296, 554
KpnI	GGTACC	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	134, 499, 618
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	1 cut(s)	415
MaeIII	GTNAC	2 cut(s)	71, 200
MalI	GATC	3 cut(s)	136, 501, 620
MboI	GATC	3 cut(s)	134, 499, 618
MboII	GAAGA	2 cut(s)	40, 557
MflI	RGATCY	1 cut(s)	134
MluCI	AATT	4 cut(s)	164, 208, 248, 454
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	4 cut(s)	7, 179, 296, 636
MroXI	GAANNNNTTC	2 cut(s)	32, 252
MseI	TTAA	1 cut(s)	458
MslI	CAYNNNNRTG	2 cut(s)	98, 147
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	1 cut(s)	662
MspR9I	CCNGG	2 cut(s)	392, 663
Mva1269I	GAATGC	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	1 cut(s)	490
NciI	CCSGG	1 cut(s)	663
NdeII	GATC	3 cut(s)	134, 499, 618
NlaIII	CATG	3 cut(s)	152, 274, 499
NlaIV	GGNNCC	2 cut(s)	284, 548
OliI	CACNNNNGTG	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	23
PctI	GAATGC	1 cut(s)	142
PdmI	GAANNNNTTC	2 cut(s)	32, 252
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	405, 535
Psp6I	CCWGG	1 cut(s)	390
PspFI	CCCAGC	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	284, 548
PspPI	GGNCC	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	3 cut(s)	302, 315, 548
RsaNI	GTAC	3 cut(s)	301, 314, 547
RseI	CAYNNNNRTG	2 cut(s)	98, 147
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	2 cut(s)	404, 534
Sau3AI	GATC	3 cut(s)	134, 499, 618
Sau96I	GGNCC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	392, 663
SmiMI	CAYNNNNRTG	2 cut(s)	98, 147
Sse9I	AATT	4 cut(s)	164, 208, 248, 454
SsiI	CCGC	4 cut(s)	125, 356, 533, 677
SspI	AATATT	1 cut(s)	352
StyD4I	CCNGG	2 cut(s)	390, 661
TaqI	TCGA	2 cut(s)	182, 288
TasI	AATT	4 cut(s)	164, 208, 248, 454
TatI	WGTACW	1 cut(s)	313
TauI	GCSGC	1 cut(s)	536
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	2 cut(s)	478, 531
TseI	GCWGC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	17, 95, 165, 259
TspRI	CASTG	2 cut(s)	478, 531
XagI	CCTNNNNNAGG	1 cut(s)	290
XapI	RAATTY	3 cut(s)	164, 208, 454
XmnI	GAANNNNTTC	2 cut(s)	32, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.