Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0028929

Physical Location & Seq

Genomic Coordinates Forward (+)

2081446 .. 2081976

Gene Structure 531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCATTCCCATGAAGGTAAAATCGAATTCCTCTCTGAGTTGTCGACTATTGCTTGCTTGCGTCACAAGAATTTGGTTCACCTTGAAGGCTGGTGCGTTGAGAAGGGTGAATTGCTTCTTGTTTACGATTTCATGCCTAATGGGAGCCTCAAAAAGGCGCTGTACCAAGAATCTGTACAATGTACCTTGTTAGATTGGTCTCGAAGACTGAATATTGCAGTCGGATTGGCGTCTGTTTTGGCATATCTGCATCAGGAATGTGAGCAGCAGGTCATCCACAGAGACATAAAGACTGGAAATGTGTTGCTTGATGGGAATTTAAACGCGAGGCTCAGTGATTTCGGGCTGGCAAAGCTCATAGATCACGATAAAAACCCTGTTTCCACACTAACAGCGGGAACAATGGGGTACCTTGCGCCTGAGTATCTTCAATATGGAAAAGCAACCGAAAAGACTGATGCTTTTGGCTATGGTGTGGTACACCCCGACCAAGATCGATCCTTGAAGTGGCGTGTGGAAGGAGGCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

177

Amino Acids

19.75

Weight (kDa)

6.04

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	4 - 160	1.5e-32	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	8 - 160	1e-31	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028929)

Species	Orthologous Gene IDs
malus_domestica	MD11G1030700.v1.1
pyrus_communis	pycom11g02490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
Acc65I	GGTACC	1 cut(s)	408
AccB1I	GGYRCC	1 cut(s)	408
AccI	GTMKAC	1 cut(s)	44
AccII	CGCG	1 cut(s)	326
AciI	CCGC	1 cut(s)	395
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	3 cut(s)	26, 70, 316
AcyI	GRCGYC	1 cut(s)	230
AfaI	GTAC	5 cut(s)	164, 177, 184, 410, 480
AfiI	CCNNNNNNNGG	2 cut(s)	154, 507
AgsI	TTSAA	3 cut(s)	86, 431, 505
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw26I	GTCTC	2 cut(s)	204, 276
AlwI	GGATC	1 cut(s)	492
AoxI	GGCC	1 cut(s)	523
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	3 cut(s)	26, 70, 316
Asp700I	GAANNNNTTC	1 cut(s)	114
Asp718I	GGTACC	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	160, 418
AsuHPI	GGTGA	2 cut(s)	71, 119
BanI	GGYRCC	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	204, 276
BfoI	RGCGCY	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
BmiI	GGNNCC	2 cut(s)	146, 410
BmsI	GCATC	2 cut(s)	259, 448
BpiI	GAAGAC	1 cut(s)	211
Bsa29I	ATCGAT	1 cut(s)	496
BsaHI	GRCGYC	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 507
Bse1I	ACTGG	1 cut(s)	298
BseCI	ATCGAT	1 cut(s)	496
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	154, 507
BseMII	CTCAG	3 cut(s)	27, 346, 411
BseNI	ACTGG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	277
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	1 cut(s)	525
BshNI	GGYRCC	1 cut(s)	408
BshVI	ATCGAT	1 cut(s)	496
BslI	CCNNNNNNNGG	2 cut(s)	154, 507
BsmAI	GTCTC	2 cut(s)	204, 276
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	525
Bso31I	GGTCTC	1 cut(s)	204
Bsp1407I	TGTACA	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	361, 493, 497
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	1 cut(s)	525
BspCNI	CTCAG	3 cut(s)	28, 345, 412
BspDI	ATCGAT	1 cut(s)	496
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	2 cut(s)	146, 410
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	408
BspTNI	GGTCTC	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	298
BssMI	GATC	3 cut(s)	361, 493, 497
BssNI	GRCGYC	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	230
BstAUI	TGTACA	1 cut(s)	175
BstC8I	GCNNGC	3 cut(s)	55, 59, 348
BstDEI	CTNAG	3 cut(s)	36, 332, 420
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	326
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	2 cut(s)	160, 418
BstKTI	GATC	3 cut(s)	364, 496, 500
BstMAI	GTCTC	2 cut(s)	204, 276
BstMBI	GATC	3 cut(s)	361, 493, 497
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	496
BsuRI	GGCC	1 cut(s)	525
BsuTUI	ATCGAT	1 cut(s)	496
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	3 cut(s)	55, 59, 348
CfoI	GCGC	2 cut(s)	160, 418
ClaI	ATCGAT	1 cut(s)	496
CseI	GACGC	2 cut(s)	50, 219
Csp6I	GTAC	5 cut(s)	163, 176, 183, 409, 479
CviAII	CATG	2 cut(s)	11, 133
CviJI	RGCY	7 cut(s)	90, 147, 331, 346, 355, 468, 525
CviKI_1	RGCY	7 cut(s)	90, 147, 331, 346, 355, 468, 525
CviQI	GTAC	5 cut(s)	163, 176, 183, 409, 479
DdeI	CTNAG	3 cut(s)	36, 332, 420
DpnI	GATC	3 cut(s)	363, 495, 499
DpnII	GATC	3 cut(s)	361, 493, 497
DraI	TTTAAA	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	204
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	14, 136
FaiI	YATR	7 cut(s)	12, 134, 244, 287, 359, 435, 471
FatI	CATG	2 cut(s)	10, 132
FauI	CCCGC	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	266
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	266
GlaI	GCGC	2 cut(s)	159, 417
GluI	GCNGC	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	525
HgaI	GACGC	2 cut(s)	50, 219
HhaI	GCGC	2 cut(s)	160, 418
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	14, 136
Hin6I	GCGC	2 cut(s)	158, 416
HinP1I	GCGC	2 cut(s)	158, 416
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	2 cut(s)	71, 119
Hpy166II	GTNNAC	4 cut(s)	45, 79, 124, 481
Hpy188I	TCNGA	2 cut(s)	37, 224
Hpy188III	TCNNGA	3 cut(s)	201, 254, 365
Hpy8I	GTNNAC	4 cut(s)	45, 79, 124, 481
HpyAV	CCTTC	4 cut(s)	8, 80, 97, 512
HpyCH4V	TGCA	3 cut(s)	4, 218, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	3 cut(s)	36, 332, 420
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	2 cut(s)	14, 136
HspAI	GCGC	2 cut(s)	158, 416
KpnI	GGTACC	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	361, 493, 497
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	7 cut(s)	76, 239, 254, 279, 332, 390, 432
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	2 cut(s)	259, 448
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	3 cut(s)	363, 495, 499
MboI	GATC	3 cut(s)	361, 493, 497
MboII	GAAGA	2 cut(s)	216, 419
MluCI	AATT	4 cut(s)	26, 70, 110, 316
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	4 cut(s)	41, 158, 321, 515
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	4
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	3 cut(s)	361, 493, 497
NlaIII	CATG	2 cut(s)	14, 136
NlaIV	GGNNCC	2 cut(s)	146, 410
NmuCI	GTSAC	1 cut(s)	62
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	4
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	146, 410
RsaI	GTAC	5 cut(s)	164, 177, 184, 410, 480
RsaNI	GTAC	5 cut(s)	163, 176, 183, 409, 479
RseI	CAYNNNNRTG	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	3 cut(s)	361, 493, 497
SetI	ASST	6 cut(s)	19, 84, 188, 273, 357, 414
SfaNI	GCATC	2 cut(s)	259, 448
SmiMI	CAYNNNNRTG	1 cut(s)	9
Sse9I	AATT	4 cut(s)	26, 70, 110, 316
SsiI	CCGC	1 cut(s)	395
SspI	AATATT	1 cut(s)	214
TaqI	TCGA	4 cut(s)	24, 44, 202, 496
TasI	AATT	4 cut(s)	26, 70, 110, 316
TatI	WGTACW	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	27, 121
TspRI	CASTG	1 cut(s)	340
XagI	CCTNNNNNAGG	1 cut(s)	152
XapI	RAATTY	3 cut(s)	26, 70, 316
XmiI	GTMKAC	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	114
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.