MD11G1033700.v1.1

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0028919
Physical Location & Seq
Reverse (-)
2962604 .. 2964595
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1033700.v1.1.491

Sequence Viewer

Length: 408 bp
ATGTTATTGCTCATGGAACCTATGGCACCGTGTATCGCGGTGCATACGATAGCCAAGATGTTGCAGTTCCTTGATGGCAAGCCATACGACAGGAAATGCGATGTCTATAGTTTTGGTTTTTGCTTGTGGGAAATCTATTGCTGCGACATGCCTTATCCTAATCTAAGTTTTGCTGATGTCTCATCTGCAGTAGTGCGACAGAATTTACGACCAGAAATTCCAAGATGTTGTCCAAGCACATTGGCTAGCGTCATGCGAAAATGTTGGGATGCAAACCCGGATAATCTTCCTGAAATGGAAGAGGTAGTGAAAATGTTGTATGCAATAGATACTAGCAAGGGAGGCGGCATGATACCCGAAGACCAGTCTACCGGCTGTTTCTGTTTCAGCACACCTCGCGGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

136

Amino Acids

15.16

Weight (kDa)

4.88

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 24 - 107 8.3e-06 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 27 - 106 1e-17 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028919)

Species Orthologous Gene IDs
malus_domestica MD11G1033700.v1.1
rosa_samantha Rh6DG322600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AccI GTMKAC 1 cut(s) 368
AccII CGCG 2 cut(s) 38, 399
AciI CCGC 3 cut(s) 38, 345, 399
AcsI RAATTY 2 cut(s) 202, 216
Alw26I GTCTC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 141
ApoI RAATTY 2 cut(s) 202, 216
AspS9I GGNCC 1 cut(s) 401
AsuC2I CCSGG 1 cut(s) 278
AsuNHI GCTAGC 1 cut(s) 245
AvaII GGWCC 1 cut(s) 401
BanI GGYRCC 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 128
BccI CCATC 1 cut(s) 68
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 2 cut(s) 246, 333
BfmI CTRYAG 2 cut(s) 106, 186
BisI GCNGC 2 cut(s) 142, 346
BlsI GCNGC 2 cut(s) 143, 347
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 2 cut(s) 18, 27
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 259
BmtI GCTAGC 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 278
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 364
BseGI GGATG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 364
BseXI GCAGC 1 cut(s) 128
Bsh1236I CGCG 2 cut(s) 38, 399
BshNI GGYRCC 1 cut(s) 25
BsiSI CCGG 2 cut(s) 278, 372
BsmAI GTCTC 1 cut(s) 184
BspACI CCGC 3 cut(s) 38, 345, 399
BspFNI CGCG 2 cut(s) 38, 399
BspLI GGNNCC 2 cut(s) 18, 27
BspMAI CTGCAG 1 cut(s) 190
BspOI GCTAGC 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 1 cut(s) 364
BssAI RCCGGY 1 cut(s) 371
Bst4CI ACNGT 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 80, 247
BstDEI CTNAG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 2 cut(s) 38, 399
BstMAI GTCTC 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 342, 396
BstNSI RCATGY 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 2 cut(s) 106, 186
BstUI CGCG 2 cut(s) 38, 399
BstV1I GCAGC 1 cut(s) 128
BstV2I GAAGAC 1 cut(s) 366
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 274
Cac8I GCNNGC 2 cut(s) 80, 247
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 1 cut(s) 401
CseI GACGC 1 cut(s) 238
CviAII CATG 4 cut(s) 13, 148, 253, 349
CviJI RGCY 4 cut(s) 53, 82, 245, 375
CviKI_1 RGCY 4 cut(s) 53, 82, 245, 375
DdeI CTNAG 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 401
FaeI CATG 4 cut(s) 16, 151, 256, 352
FatI CATG 4 cut(s) 12, 147, 252, 348
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 2 cut(s) 142, 346
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 2 cut(s) 142, 346
FspBI CTAG 2 cut(s) 246, 333
GluI GCNGC 2 cut(s) 142, 346
HapII CCGG 2 cut(s) 278, 372
HgaI GACGC 1 cut(s) 238
Hin1II CATG 4 cut(s) 16, 151, 256, 352
HpaII CCGG 2 cut(s) 278, 372
Hpy166II GTNNAC 1 cut(s) 369
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 369
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4V TGCA 5 cut(s) 43, 64, 188, 272, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 342, 396
HpyF3I CTNAG 1 cut(s) 164
Hsp92II CATG 4 cut(s) 16, 151, 256, 352
LpnPI CCDG 6 cut(s) 76, 225, 291, 303, 377, 385
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 1 cut(s) 259
MaeI CTAG 2 cut(s) 246, 333
MboII GAAGA 3 cut(s) 278, 311, 371
MluCI AATT 2 cut(s) 202, 216
MnlI CCTC 3 cut(s) 295, 335, 405
MspI CCGG 2 cut(s) 278, 372
MspR9I CCNGG 1 cut(s) 278
MvnI CGCG 2 cut(s) 38, 399
MwoI GCNNNNNNNGC 2 cut(s) 342, 396
NciI CCSGG 1 cut(s) 278
NheI GCTAGC 1 cut(s) 245
NlaIII CATG 4 cut(s) 16, 151, 256, 352
NlaIV GGNNCC 2 cut(s) 18, 27
NspI RCATGY 1 cut(s) 151
PkrI GCNGC 2 cut(s) 143, 347
PspN4I GGNNCC 2 cut(s) 18, 27
PspPI GGNCC 1 cut(s) 401
PstI CTGCAG 1 cut(s) 190
SatI GCNGC 2 cut(s) 142, 346
Sau96I GGNCC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 278
SetI ASST 3 cut(s) 22, 306, 397
SfaNI GCATC 1 cut(s) 259
SfcI CTRYAG 2 cut(s) 106, 186
SinI GGWCC 1 cut(s) 401
Sse9I AATT 2 cut(s) 202, 216
SsiI CCGC 3 cut(s) 38, 345, 399
SspMI CTAG 2 cut(s) 246, 333
StyD4I CCNGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 30
TasI AATT 2 cut(s) 202, 216
TauI GCSGC 1 cut(s) 348
TseI GCWGC 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 2 cut(s) 202, 216
XceI RCATGY 1 cut(s) 151
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 2 cut(s) 246, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.