Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0022390

Physical Location & Seq

Genomic Coordinates Reverse (-)

4297799 .. 4299661

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1050200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCAGAAGATGACGCATGAATGGTTTTCGCAGACCGGCAGCGGAGTCGACGACTCGCAGAAGCCATCATCGTCTTCTTTGCTAGCCGATTGGAACTCCTACGCTGTTTCACAATCCACTGACGAGAGCTCCTCTTTGGGACTTGGATTCGATCTTGAATCTGCGGTGCGCTCTGCTAACGACACTGTTTCCGGCACTTTCAGCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031984 GO:0031985 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Got1

Protein Analysis

70

Amino Acids

7.34

Weight (kDa)

4.12

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0022390)

Species	Orthologous Gene IDs
malus_domestica	MD08G1197900.v1.1 MD11G1050200.v1.1 MD11G1187300.v1.1
rosa_multiflora	Rmu_sc0004916.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	2 cut(s)	42, 164
AgsI	TTSAA	1 cut(s)	158
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
Alw21I	GWGCWC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	171
AsuNHI	GCTAGC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	1 cut(s)	73
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BfaI	CTAG	1 cut(s)	83
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
BmtI	GCTAGC	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bse118I	RCCGGY	1 cut(s)	35
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	36, 192
BslFI	GGGAC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	2 cut(s)	42, 164
BspOI	GCTAGC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssMI	GATC	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	117, 183
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	35
CseI	GACGC	1 cut(s)	22
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	3 cut(s)	64, 86, 129
CviKI_1	RGCY	3 cut(s)	64, 86, 129
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	1 cut(s)	20
FaiI	YATR	1 cut(s)	18
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	40
HapII	CCGG	2 cut(s)	36, 192
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	4 cut(s)	45, 53, 147, 158
HpaII	CCGG	2 cut(s)	36, 192
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	53
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	20
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	2 cut(s)	49, 205
Lsp1109I	GCAGC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	83
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	2 cut(s)	19, 66
MhlI	GDGCHC	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	47, 54
MnlI	CCTC	1 cut(s)	142
MseI	TTAA	1 cut(s)	208
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	2 cut(s)	36, 192
MwoI	GCNNNNNNNGC	1 cut(s)	201
NdeII	GATC	1 cut(s)	151
NheI	GCTAGC	1 cut(s)	82
NlaIII	CATG	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	147, 158
PkrI	GCNGC	1 cut(s)	41
PleI	GAGTC	2 cut(s)	47, 53
PpsI	GAGTC	2 cut(s)	47, 53
Psp124BI	GAGCTC	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	131
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	208
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	1 cut(s)	151
SchI	GAGTC	2 cut(s)	47, 54
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	1 cut(s)	131
SgeI	CNNG	8 cut(s)	29, 48, 67, 95, 136, 155, 167, 204
SsiI	CCGC	2 cut(s)	42, 164
SspMI	CTAG	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	2 cut(s)	48, 150
TfiI	GAWTC	2 cut(s)	147, 158
Tru1I	TTAA	1 cut(s)	208
Tru9I	TTAA	1 cut(s)	208
TscAI	CASTG	2 cut(s)	124, 190
TseI	GCWGC	1 cut(s)	39
TspDTI	ATGAA	1 cut(s)	33
TspRI	CASTG	2 cut(s)	124, 190
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.