Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0022390

Physical Location & Seq

Genomic Coordinates Forward (+)

26328572 .. 26329226

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1187300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCAGAAGATGGCGCATGAATGGTTTTCGCAGACTGGCAGCGGCGTCGACGACTCGCAGAAGCCATCGTCATCTTCTTTGCTAGCCAATTGGAACTCCTACGCTGTTTCACAATCCATTGATGATAACTCCTCTTTGGGACTTGGATTCGATCTCCAATCTACGGTGCGCTCTGCTAACGACACTGTTTTTGGGACTTTTAGCGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031984 GO:0031985 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Got1

Protein Analysis

71

Amino Acids

7.55

Weight (kDa)

4.31

Isoelectric Point (pI)

59.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0022390)

Species	Orthologous Gene IDs
malus_domestica	MD08G1197900.v1.1 MD11G1050200.v1.1 MD11G1187300.v1.1
rosa_multiflora	Rmu_sc0004916.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	39
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	2 cut(s)	16, 171
AsuNHI	GCTAGC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	2 cut(s)	4, 73
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BfaI	CTAG	1 cut(s)	83
BisI	GCNGC	2 cut(s)	40, 43
BlsI	GCNGC	2 cut(s)	41, 44
BmtI	GCTAGC	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	51
BslFI	GGGAC	2 cut(s)	153, 208
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	153, 208
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	42
BspOI	GCTAGC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	151
BssNI	GRCGYC	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	166, 187
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	16, 171
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	2 cut(s)	16, 171
CseI	GACGC	1 cut(s)	34
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	2 cut(s)	64, 86
CviKI_1	RGCY	2 cut(s)	64, 86
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
FaeI	CATG	1 cut(s)	20
FaiI	YATR	1 cut(s)	18
FaqI	GGGAC	2 cut(s)	153, 208
FatI	CATG	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	40, 43
Fsp4HI	GCNGC	2 cut(s)	40, 43
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	2 cut(s)	15, 170
GluI	GCNGC	2 cut(s)	40, 43
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	2 cut(s)	16, 171
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	20
Hin6I	GCGC	2 cut(s)	14, 169
HinP1I	GCGC	2 cut(s)	14, 169
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	53, 147
Hpy166II	GTNNAC	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	2 cut(s)	50, 53
HpyCH4III	ACNGT	2 cut(s)	166, 187
HpyCH4V	TGCA	1 cut(s)	4
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	20
HspAI	GCGC	2 cut(s)	14, 169
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	1 cut(s)	21
Lsp1109I	GCAGC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	83
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	2 cut(s)	19, 66
MfeI	CAATTG	1 cut(s)	88
MluCI	AATT	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	1 cut(s)	142
MspA1I	CMGCKG	1 cut(s)	42
MunI	CAATTG	1 cut(s)	88
NdeII	GATC	1 cut(s)	151
NheI	GCTAGC	1 cut(s)	82
NlaIII	CATG	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	41, 44
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
SalI	GTCGAC	1 cut(s)	47
SatI	GCNGC	2 cut(s)	40, 43
Sau3AI	GATC	1 cut(s)	151
SchI	GAGTC	1 cut(s)	47
SgeI	CNNG	5 cut(s)	29, 48, 67, 95, 155
SgrDI	CGTCGACG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	1 cut(s)	83
TaaI	ACNGT	2 cut(s)	166, 187
TaqI	TCGA	2 cut(s)	48, 150
TasI	AATT	1 cut(s)	88
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	147
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	1 cut(s)	39
TspDTI	ATGAA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.