Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0024288

Physical Location & Seq

Genomic Coordinates Reverse (-)

8407007 .. 8408428

Gene Structure 1422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1100500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTGCATACATGGAGAAAGCTGTCACATATAAGGCAAACTTTGAGGGAAGAGCACGGTGGCGTGTGCTTTGAGTGGGAATTTGTACCGCAGGAGAATATGTTGTACATTCTTGATGGGGACATTGTCAGGCATGGCTTGAATCGCGACCTTAGTTTTAAAGCAGAACATCGTGCAGAGAACATTCAGAGGATTGGTAGTACGTGTATGCCTCTTTTTAGATTAACTAAACCCTTTTTTAGATTAACTATGGCTTTCTGCTTCATTATGTATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00230 ko00920 ko01100 ko01120 map00230 map00920 map01100 map01120

Pfam Domains

Protein Families

APS_kinase Adaptin_N Coatamer_beta_C Coatomer_b_Cpla

Protein Analysis

93

Amino Acids

11.05

Weight (kDa)

8.59

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	30 - 69	2.7e-10	Adenylylsulphate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024288)

Species	Orthologous Gene IDs
malus_domestica	MD11G1100500.v1.1 MD15G1430000.v1.1
pyrus_communis	pycom01g02560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	147
AciI	CCGC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	80
AfaI	GTAC	3 cut(s)	87, 107, 202
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw21I	GWGCWC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
BsgI	GTGCAG	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp1407I	TGTACA	1 cut(s)	105
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	1 cut(s)	89
BspFNI	CGCG	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	275
BspQI	GCTCTTC	1 cut(s)	45
BsrGI	TGTACA	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	45
BstAUI	TGTACA	1 cut(s)	105
BstBAI	YACGTR	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstUI	CGCG	1 cut(s)	147
BtuMI	TCGCGA	1 cut(s)	147
CciI	TCATGA	1 cut(s)	275
Csp6I	GTAC	3 cut(s)	86, 106, 201
CviAII	CATG	3 cut(s)	12, 134, 276
CviJI	RGCY	3 cut(s)	22, 138, 254
CviKI_1	RGCY	3 cut(s)	22, 138, 254
CviQI	GTAC	3 cut(s)	86, 106, 201
DdeI	CTNAG	1 cut(s)	152
DraI	TTTAAA	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
FaeI	CATG	3 cut(s)	15, 137, 279
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	3 cut(s)	11, 133, 275
Hin1II	CATG	3 cut(s)	15, 137, 279
HinfI	GANTC	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	3 cut(s)	113, 146, 276
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	7, 176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	15, 137, 279
LguI	GCTCTTC	1 cut(s)	45
LpnPI	CCDG	2 cut(s)	77, 115
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	24
MboII	GAAGA	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	3 cut(s)	39, 183, 222
MseI	TTAA	3 cut(s)	159, 224, 245
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	144
NlaIII	CATG	3 cut(s)	15, 137, 279
NmuCI	GTSAC	1 cut(s)	24
NruI	TCGCGA	1 cut(s)	147
PagI	TCATGA	1 cut(s)	275
PciSI	GCTCTTC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	142
PflFI	GACNNNGTC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	204
PsyI	GACNNNGTC	1 cut(s)	125
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	3 cut(s)	87, 107, 202
RsaNI	GTAC	3 cut(s)	86, 106, 201
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	159, 224, 245
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	3 cut(s)	24, 153, 206
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	1 cut(s)	206
TasI	AATT	1 cut(s)	80
TatI	WGTACW	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	3 cut(s)	159, 224, 245
Tru9I	TTAA	3 cut(s)	159, 224, 245
TseFI	GTSAC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	2 cut(s)	253, 264
Tth111I	GACNNNGTC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.