MD15G1430000.v1.1

intra-Golgi vesicle-mediated transport

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
53022520 .. 53023724
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1430000.v1.1.491

Sequence Viewer

Length: 213 bp
ATGGTGCATACATGGAGAAAGCTGTCACATATAAGGCAAACTTTGAGGGAAGAGCATGGTGGCATGTGCTTTGGGTGGGAGTTTGTACTGCAGGGGAAGCCGTCGTACATTCTTGAAGCAGAACATTGTGCAGAGAACATTCGGAGGATTGTTTTTCAATTCATCTGGGGTATTTGTTATTTGAACGACACTAAAATTATTTATGGGTTATAG

Protein Analysis

71

Amino Acids

8.38

Weight (kDa)

7.78

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0024288)

Species Orthologous Gene IDs
malus_domestica MD11G1100500.v1.1 MD15G1430000.v1.1
pyrus_communis pycom01g02560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 87, 107
AgsI TTSAA 3 cut(s) 116, 158, 184
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BceAI ACGGC 1 cut(s) 85
BfmI CTRYAG 1 cut(s) 89
BsgI GTGCAG 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 93
BspQI GCTCTTC 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 89
Csp6I GTAC 2 cut(s) 86, 106
CviAII CATG 3 cut(s) 12, 56, 64
CviJI RGCY 2 cut(s) 22, 100
CviKI_1 RGCY 2 cut(s) 22, 100
CviQI GTAC 2 cut(s) 86, 106
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
FaeI CATG 3 cut(s) 15, 59, 67
FaiI YATR 8 cut(s) 9, 13, 30, 32, 57, 65, 204, 211
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FatI CATG 3 cut(s) 11, 55, 63
Hin1II CATG 3 cut(s) 15, 59, 67
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 7, 91, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
Hsp92II CATG 3 cut(s) 15, 59, 67
LguI GCTCTTC 1 cut(s) 45
LpnPI CCDG 2 cut(s) 77, 151
MaeIII GTNAC 1 cut(s) 24
MboII GAAGA 1 cut(s) 62
MluCI AATT 2 cut(s) 158, 195
MnlI CCTC 2 cut(s) 39, 138
MwoI GCNNNNNNNGC 1 cut(s) 97
NlaIII CATG 3 cut(s) 15, 59, 67
NmuCI GTSAC 1 cut(s) 24
NspI RCATGY 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 45
PstI CTGCAG 1 cut(s) 93
RsaI GTAC 2 cut(s) 87, 107
RsaNI GTAC 2 cut(s) 86, 106
SapI GCTCTTC 1 cut(s) 45
SetI ASST 1 cut(s) 24
SfcI CTRYAG 1 cut(s) 89
SgeI CNNG 6 cut(s) 24, 68, 76, 104, 125, 178
Sse9I AATT 2 cut(s) 158, 195
TasI AATT 2 cut(s) 158, 195
TatI WGTACW 1 cut(s) 85
TseFI GTSAC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 151
XceI RCATGY 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.