Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0022433

Physical Location & Seq

Genomic Coordinates Forward (+)

8811705 .. 8812910

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1103900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGTGCTCTAGACGCACAGAGAGTGGTTCATCAACACCAGAGATGGTGGCTGATCTCATGTATGTGGTTACATGCTGGAGTTTTCCATGTGCTTGCCAATATGCTGAGTCTTGTATTCGTTGGAATTTGGCTTGAGCAAGAATTTGGATTTGTTAGCAGCATTGGTTACTCTCCTTTTCTTCATCATAATACACTTAGCAGTGGAATTCTACCACACGCGGACAACTTTGCTCATATTGGAGGATTTGTCCCCGGATTTCTTCTTGGATTTTTGTATTCGGCTTCTACTTTGTTGTTTTGGGTTGTATGTGCTGGCAGGTGTACTCTTGGCCTGGTTACTCTTTTTCGAGGGGTCAATCTGAACAATCATTGTTCCTGGTGTCATTATTTGAGCAGTGTCCCTACGTCAAAATGGAATTGCAAGTCACAAAATATTTATTGTTTGGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

152

Amino Acids

16.98

Weight (kDa)

8.23

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	13 - 53	2.2e-09	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022433)

Species	Orthologous Gene IDs
malus_domestica	MD11G1103900.v1.1 MD11G1105300.v1.1 MD11G1106500.v1.1
pyrus_communis	pycom11g07880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	309
Acc36I	ACCTGC	1 cut(s)	309
AccII	CGCG	1 cut(s)	221
AciI	CCGC	1 cut(s)	221
AcsI	RAATTY	3 cut(s)	126, 143, 207
AfaI	GTAC	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	333, 377
Alw21I	GWGCWC	1 cut(s)	10
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	159
ApoI	RAATTY	3 cut(s)	126, 143, 207
AsuC2I	CCSGG	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	1 cut(s)	39
BciT130I	CCWGG	2 cut(s)	335, 379
BcnI	CCSGG	1 cut(s)	255
BfaI	CTAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	309
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
Bme1390I	CCNGG	3 cut(s)	255, 335, 379
BmrFI	CCNGG	3 cut(s)	255, 335, 379
BpmI	CTGGAG	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
BseBI	CCWGG	2 cut(s)	335, 379
BseDI	CCNNGG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	2 cut(s)	236, 386
BsmFI	GGGAC	2 cut(s)	236, 386
BsnI	GGCC	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	221
BspMI	ACCTGC	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	54
Bst2UI	CCWGG	2 cut(s)	335, 379
BstC8I	GCNNGC	2 cut(s)	96, 316
BstDEI	CTNAG	2 cut(s)	107, 197
BstFNI	CGCG	1 cut(s)	221
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	2 cut(s)	335, 379
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	3 cut(s)	253, 333, 377
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	333
BtsI	GCAGTG	2 cut(s)	208, 403
BtsIMutI	CAGTG	2 cut(s)	208, 403
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	96, 316
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	3 cut(s)	60, 74, 89
CviJI	RGCY	4 cut(s)	52, 133, 284, 333
CviKI_1	RGCY	4 cut(s)	52, 133, 284, 333
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	2 cut(s)	107, 197
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	2 cut(s)	333, 377
FaeI	CATG	3 cut(s)	63, 77, 92
FaiI	YATR	8 cut(s)	61, 65, 75, 90, 104, 189, 237, 310
FaqI	GGGAC	2 cut(s)	236, 386
FatI	CATG	3 cut(s)	59, 73, 88
Fnu4HI	GCNGC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	160
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	63, 77, 92
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	255
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	1 cut(s)	324
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	1 cut(s)	423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	2 cut(s)	107, 197
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	3 cut(s)	63, 77, 92
Kzo9I	GATC	1 cut(s)	54
LpnPI	CCDG	9 cut(s)	53, 63, 268, 300, 304, 320, 347, 364, 391
Lsp1109I	GCAGC	1 cut(s)	171
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	4 cut(s)	69, 167, 337, 426
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	2 cut(s)	173, 254
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	5 cut(s)	126, 143, 207, 418, 451
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	2 cut(s)	236, 344
MseI	TTAA	1 cut(s)	454
MslI	CAYNNNNRTG	1 cut(s)	64
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	3 cut(s)	255, 335, 379
MvaI	CCWGG	2 cut(s)	335, 379
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	14
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	3 cut(s)	63, 77, 92
NmuCI	GTSAC	1 cut(s)	426
NspI	RCATGY	1 cut(s)	77
PaqCI	CACCTGC	1 cut(s)	309
PkrI	GCNGC	1 cut(s)	161
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	333, 377
PspGI	CCWGG	2 cut(s)	333, 377
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	454
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	3 cut(s)	255, 335, 379
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	2 cut(s)	323, 410
SmiMI	CAYNNNNRTG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	5 cut(s)	126, 143, 207, 418, 451
SsiI	CCGC	1 cut(s)	221
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	3 cut(s)	253, 333, 377
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	1 cut(s)	349
TasI	AATT	5 cut(s)	126, 143, 207, 418, 451
TatI	WGTACW	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	454
Tru9I	TTAA	1 cut(s)	454
TscAI	CASTG	2 cut(s)	208, 403
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	1 cut(s)	159
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	2 cut(s)	20, 173
TspRI	CASTG	2 cut(s)	208, 403
XapI	RAATTY	3 cut(s)	126, 143, 207
XbaI	TCTAGA	1 cut(s)	10
XceI	RCATGY	1 cut(s)	77
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.