Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0022433

Physical Location & Seq

Genomic Coordinates Forward (+)

8977546 .. 8978691

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1105300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCTTTCAGAGCTCATATCAAATTGGACAATTGGAATTCTACCACATGTGGACAACTTTGCTCATATTGGAGGATTTGTCTCCGGATTTCTTCGTGGATTTTTGTTTTTGATCCGCCTCCAGTTTAAATGGCTTACACAACGGAATGCTCCCCCTAGACGTGTTAGTACTCCAGTTAAATCTAAACACAATGCGTATCGATATGTATTGTGGGTCCCCTTTTTGATACTATTGATTGTTAGAATGGTTTGGAGAAGGCATTGGGTTATTGTTATCGCTGTTCTCTTTGTATTCATTTTCCTCATATCTACGTGGTATCAGAATATGCAGGCATTTTCGAACAGTCATCATGTTTTTGACAGGTATACTCTTGGCCTAGTTACTCTTTTTCAAGAGGTCAATCTAAACAATCATTGTTCCTGGTGTCATTATTTGAGCAGTGTCTCTACATCAAAATGGAATTGCAAATCACAAAATACTTATTGTTTGGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006928 GO:0008150 GO:0008283 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

166

Amino Acids

19.54

Weight (kDa)

10.11

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022433)

Species	Orthologous Gene IDs
malus_domestica	MD11G1103900.v1.1 MD11G1105300.v1.1 MD11G1106500.v1.1
pyrus_communis	pycom11g07880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	365
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	36
AfaI	GTAC	1 cut(s)	169
AflIII	ACRYGT	2 cut(s)	46, 160
AgsI	TTSAA	1 cut(s)	392
AjiI	CACGTC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	2 cut(s)	85, 448
AlwI	GGATC	1 cut(s)	106
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	1 cut(s)	373
ApoI	RAATTY	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	214
AsuII	TTCGAA	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	15
BciT130I	CCWGG	1 cut(s)	421
BcoDI	GTCTC	2 cut(s)	85, 448
BfaI	CTAG	2 cut(s)	156, 377
BmcAI	AGTACT	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	214
BmgBI	CACGTC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	215, 216
BmrFI	CCNGG	1 cut(s)	421
BpmI	CTGGAG	2 cut(s)	104, 156
Bpu14I	TTCGAA	1 cut(s)	338
Bsa29I	ATCGAT	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bse1I	ACTGG	2 cut(s)	121, 173
BseAI	TCCGGA	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	421
BseCI	ATCGAT	1 cut(s)	199
BseNI	ACTGG	2 cut(s)	121, 173
BshFI	GGCC	1 cut(s)	375
BshVI	ATCGAT	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	200
BsmAI	GTCTC	2 cut(s)	85, 448
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	375
Bsp119I	TTCGAA	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	375
BspDI	ATCGAT	1 cut(s)	199
BspEI	TCCGGA	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	215, 216
BspPI	GGATC	1 cut(s)	106
BspT104I	TTCGAA	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	121, 173
BssMI	GATC	1 cut(s)	111
BssNAI	GTATAC	1 cut(s)	366
Bst1107I	GTATAC	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	312
BstBI	TTCGAA	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	330
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	2 cut(s)	85, 448
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	419
BstZ17I	GTATAC	1 cut(s)	366
Bsu15I	ATCGAT	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	375
BsuTUI	ATCGAT	1 cut(s)	199
BtrI	CACGTC	1 cut(s)	161
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	2 cut(s)	47, 350
CviJI	RGCY	3 cut(s)	13, 133, 375
CviKI_1	RGCY	3 cut(s)	13, 133, 375
CviQI	GTAC	1 cut(s)	168
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
DraI	TTTAAA	1 cut(s)	127
EciI	GGCGGA	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	419
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	2 cut(s)	50, 353
FaiI	YATR	8 cut(s)	17, 48, 66, 204, 305, 326, 351, 366
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	2 cut(s)	46, 349
FblI	GTMKAC	1 cut(s)	365
FriOI	GRGCYC	1 cut(s)	15
FspBI	CTAG	2 cut(s)	156, 377
GsuI	CTGGAG	2 cut(s)	104, 156
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	2 cut(s)	50, 353
HpaII	CCGG	1 cut(s)	84
Hpy166II	GTNNAC	2 cut(s)	52, 366
Hpy188I	TCNGA	2 cut(s)	10, 321
Hpy188III	TCNNGA	2 cut(s)	84, 392
Hpy8I	GTNNAC	2 cut(s)	52, 366
HpyAV	CCTTC	1 cut(s)	249
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	2 cut(s)	160, 311
HpyCH4V	TGCA	2 cut(s)	328, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpySE526I	ACGT	2 cut(s)	160, 311
Hsp92II	CATG	2 cut(s)	50, 353
KflI	GGGWCCC	1 cut(s)	214
Kpn2I	TCCGGA	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	97, 134, 186, 314, 346, 406, 433
MaeI	CTAG	2 cut(s)	156, 377
MaeII	ACGT	2 cut(s)	160, 311
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	1 cut(s)	83
MfeI	CAATTG	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	5 cut(s)	22, 30, 36, 460, 493
MnlI	CCTC	4 cut(s)	65, 128, 311, 388
MroI	TCCGGA	1 cut(s)	83
MseI	TTAA	3 cut(s)	126, 177, 496
MslI	CAYNNNNRTG	1 cut(s)	454
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	421
MunI	CAATTG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	50, 353
NlaIV	GGNNCC	2 cut(s)	215, 216
NspI	RCATGY	1 cut(s)	50
NspV	TTCGAA	1 cut(s)	338
PciI	ACATGT	1 cut(s)	46
PctI	GAATGC	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	312
PpuMI	RGGWCCY	1 cut(s)	214
PscI	ACATGT	1 cut(s)	46
Psp124BI	GAGCTC	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	215, 216
PspPI	GGNCC	1 cut(s)	214
PspPPI	RGGWCCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	454
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	126, 177, 496
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	214
ScaI	AGTACT	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	5 cut(s)	15, 163, 314, 365, 399
SfuI	TTCGAA	1 cut(s)	338
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	454
Sse9I	AATT	5 cut(s)	22, 30, 36, 460, 493
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	2 cut(s)	156, 377
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	419
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	2 cut(s)	163, 314
TaqI	TCGA	2 cut(s)	199, 338
TasI	AATT	5 cut(s)	22, 30, 36, 460, 493
TatI	WGTACW	1 cut(s)	167
Tru1I	TTAA	3 cut(s)	126, 177, 496
Tru9I	TTAA	3 cut(s)	126, 177, 496
TscAI	CASTG	1 cut(s)	445
TspDTI	ATGAA	1 cut(s)	283
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	365
XspI	CTAG	2 cut(s)	156, 377
ZrmI	AGTACT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.