MD11G1148900.v1.1

carbohydrate transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0028923
Physical Location & Seq
Reverse (-)
14105593 .. 14106099
507 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1148900.v1.1.491

Sequence Viewer

Length: 294 bp
ATGAACTCCGCGGCGGCGCTGAGTTCAGTTGCTGTGGCACATACAATTGGGCATGTAGCAGCTACTGTTAGTATGTCTAAGGTTGCAGTTTCCTTCACCCATATCATCAAGAGTGGAGAGCCAGCTTTCAGTGTATTGGTTTCGAGGTTCTTGCTGGGCGAGTCCTTCCCTATATCGGTCTACCTGTCCCTCCTTCCAATCATCGGTGGTTGCGGTCTTGCTGCCTTGACAGAGCTTAACTTTAACATGATAGGTAACGATTTTGTTCTTGTCCCAGAGGGAATGGAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006996 GO:0007033 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009536 GO:0009553 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010152 GO:0010154 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0016043 GO:0019904 GO:0021700 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0034389 GO:0035436 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071840 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039
KEGG Pathways
Metabolic & Signaling
ko01522 ko01524 ko04068 ko04110 ko04115 ko04120 ko04144 ko04151 ko04218 ko04919 ko05165 ko05169 ko05200 ko05202 ko05203 ko05205 ko05206 ko05214 ko05215 ko05218 ko05219 ko05220 map01522 map01524 map04068 map04110 map04115 map04120 map04144 map04151 map04218 map04919 map05165 map05169 map05200 map05202 map05203 map05205 map05206 map05214 map05215 map05218 map05219 map05220
Pfam Domains
Protein Families
TPT

Protein Analysis

98

Amino Acids

10.05

Weight (kDa)

5.36

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 5 - 85 1.3e-32 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028923)

Species Orthologous Gene IDs
malus_domestica MD11G1148900.v1.1
pyrus_communis pycom05g31170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 180
AccII CGCG 1 cut(s) 11
AciI CCGC 4 cut(s) 9, 11, 14, 213
AfiI CCNNNNNNNGG 2 cut(s) 175, 203
AluBI AGCT 3 cut(s) 62, 125, 235
AluI AGCT 3 cut(s) 62, 125, 235
AlwNI CAGNNNCTG 2 cut(s) 32, 65
ApeKI GCWGC 2 cut(s) 59, 221
AspLEI GCGC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 88
BbvI GCAGC 2 cut(s) 71, 208
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BfoI RGCGCY 1 cut(s) 20
BisI GCNGC 4 cut(s) 12, 15, 60, 222
BlsI GCNGC 4 cut(s) 13, 16, 61, 223
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 203
BseDI CCNNGG 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 175, 203
BseMII CTCAG 1 cut(s) 11
BseXI GCAGC 2 cut(s) 71, 208
BseYI CCCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 11
BslFI GGGAC 2 cut(s) 172, 257
BslI CCNNNNNNNGG 2 cut(s) 175, 203
BsmFI GGGAC 2 cut(s) 172, 257
BspACI CCGC 4 cut(s) 9, 11, 14, 213
BspCNI CTCAG 1 cut(s) 12
BspFNI CGCG 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 20, 78
BstDSI CCRYGG 1 cut(s) 9
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstNSI RCATGY 1 cut(s) 56
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 71, 208
BtgI CCRYGG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 123
CaiI CAGNNNCTG 2 cut(s) 32, 65
CfoI GCGC 1 cut(s) 19
Cfr42I CCGCGG 1 cut(s) 12
CviAII CATG 2 cut(s) 53, 247
CviJI RGCY 4 cut(s) 62, 121, 125, 235
CviKI_1 RGCY 4 cut(s) 62, 121, 125, 235
DdeI CTNAG 2 cut(s) 20, 78
FaeI CATG 2 cut(s) 56, 250
FaiI YATR 6 cut(s) 42, 54, 74, 102, 173, 248
FaqI GGGAC 2 cut(s) 172, 257
FatI CATG 2 cut(s) 52, 246
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 4 cut(s) 12, 15, 60, 222
Fsp4HI GCNGC 4 cut(s) 12, 15, 60, 222
GlaI GCGC 1 cut(s) 18
GluI GCNGC 4 cut(s) 12, 15, 60, 222
GsaI CCCAGC 1 cut(s) 158
HaeII RGCGCY 1 cut(s) 20
HhaI GCGC 1 cut(s) 19
Hin1II CATG 2 cut(s) 56, 250
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 1 cut(s) 161
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 3 cut(s) 103, 175, 203
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 20, 78
Hsp92II CATG 2 cut(s) 56, 250
HspAI GCGC 1 cut(s) 17
KspI CCGCGG 1 cut(s) 12
LpnPI CCDG 4 cut(s) 135, 140, 197, 288
Lsp1109I GCAGC 2 cut(s) 71, 208
MaeIII GTNAC 1 cut(s) 254
MfeI CAATTG 1 cut(s) 45
MluCI AATT 2 cut(s) 45, 287
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 3 cut(s) 138, 200, 271
MseI TTAA 2 cut(s) 237, 243
MspA1I CMGCKG 1 cut(s) 11
MunI CAATTG 1 cut(s) 45
MvnI CGCG 1 cut(s) 11
NlaIII CATG 2 cut(s) 56, 250
NspI RCATGY 1 cut(s) 56
PkrI GCNGC 4 cut(s) 13, 16, 61, 223
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 154
PstNI CAGNNNCTG 2 cut(s) 32, 65
SacII CCGCGG 1 cut(s) 12
SaqAI TTAA 2 cut(s) 237, 243
SatI GCNGC 4 cut(s) 12, 15, 60, 222
SchI GAGTC 1 cut(s) 170
SetI ASST 7 cut(s) 64, 84, 127, 149, 186, 237, 256
Sfr303I CCGCGG 1 cut(s) 12
SgrBI CCGCGG 1 cut(s) 12
Sse9I AATT 2 cut(s) 45, 287
SsiI CCGC 4 cut(s) 9, 11, 14, 213
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 143
TaqII GACCGA 1 cut(s) 166
TasI AATT 2 cut(s) 45, 287
TauI GCSGC 2 cut(s) 14, 17
Tru1I TTAA 2 cut(s) 237, 243
Tru9I TTAA 2 cut(s) 237, 243
TscAI CASTG 1 cut(s) 136
TseI GCWGC 2 cut(s) 59, 221
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 136
XceI RCATGY 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.