Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0028923

Physical Location & Seq

Genomic Coordinates Forward (+)

31015204 .. 31015710

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g31170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGATGCTCGTTACATGGGCCACCAGGATTGCCGAGGTTGCGGTGGCACATACAATTGGGCATGTCGCGGCGACCGTGAGCATGGCGAAGGTAGCAGTTTCGTTCACTCACATCATCAAGAGCAGTGAGCCTGCATTCAGTGTATTGGTTTCAAGGTTCTTGTTAGGTGAATCGTTTCCTCTCTCAGTTTACCTCTCGCTCTTTCCAATCATTGGAGGATGTGCGCTCGCTGCTGCAACCGAGCTCAATTTCAACATGACTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0008643 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009642 GO:0009643 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010109 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0015979 GO:0016020 GO:0019222 GO:0022804 GO:0022857 GO:0031090 GO:0031323 GO:0034219 GO:0034220 GO:0034284 GO:0034285 GO:0035436 GO:0042221 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0071917 GO:0080167 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901505 GO:1901700 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

89

Amino Acids

9.28

Weight (kDa)

6.81

Isoelectric Point (pI)

24.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	8 - 88	1.6e-32	Triose-phosphate Transporter family
EamA	PF00892	13 - 77	6.4e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028923)

Species	Orthologous Gene IDs
malus_domestica	MD11G1148900.v1.1
pyrus_communis	pycom05g31170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccII	CGCG	1 cut(s)	68
AciI	CCGC	2 cut(s)	41, 68
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	153, 253
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
Alw21I	GWGCWC	1 cut(s)	246
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	230, 233
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	217, 220
BciT130I	CCWGG	1 cut(s)	25
BisI	GCNGC	3 cut(s)	69, 231, 234
BlsI	GCNGC	3 cut(s)	70, 232, 235
Bme1390I	CCNGG	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	217, 220
Bsh1236I	CGCG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	246
BspACI	CCGC	2 cut(s)	41, 68
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	132, 228
BstDEI	CTNAG	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	224
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	226
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 92, 230
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	23
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	217, 220
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	224
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	2 cut(s)	130, 145
Cac8I	GCNNGC	2 cut(s)	132, 228
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	18
CspCI	CAANNNNNGTGG	2 cut(s)	10, 45
CviAII	CATG	4 cut(s)	15, 62, 82, 256
CviJI	RGCY	3 cut(s)	20, 130, 244
CviKI_1	RGCY	3 cut(s)	20, 130, 244
DdeI	CTNAG	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	4 cut(s)	18, 65, 85, 259
FaiI	YATR	5 cut(s)	16, 51, 63, 83, 257
FatI	CATG	4 cut(s)	14, 61, 81, 255
Fnu4HI	GCNGC	3 cut(s)	69, 231, 234
FokI	GGATG	1 cut(s)	231
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	3 cut(s)	69, 231, 234
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	3 cut(s)	69, 231, 234
HaeIII	GGCC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	4 cut(s)	18, 65, 85, 259
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	2 cut(s)	105, 190
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	2 cut(s)	105, 190
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	134, 236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 92, 230
HpyF3I	CTNAG	1 cut(s)	184
Hsp92II	CATG	4 cut(s)	18, 65, 85, 259
HspAI	GCGC	1 cut(s)	224
LpnPI	CCDG	4 cut(s)	10, 37, 144, 246
Lsp1109I	GCAGC	2 cut(s)	217, 220
MaeIII	GTNAC	1 cut(s)	10
MfeI	CAATTG	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	54, 247
MnlI	CCTC	4 cut(s)	28, 189, 203, 209
MroXI	GAANNNNTTC	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	25
MunI	CAATTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	3 cut(s)	38, 92, 230
NlaIII	CATG	4 cut(s)	18, 65, 85, 259
NmeAIII	GCCGAG	1 cut(s)	58
NspI	RCATGY	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	70, 232, 235
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspPI	GGNCC	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	246
SatI	GCNGC	3 cut(s)	69, 231, 234
Sau96I	GGNCC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	6 cut(s)	39, 93, 158, 169, 195, 246
Sse9I	AATT	2 cut(s)	54, 247
SsiI	CCGC	2 cut(s)	41, 68
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	76
TasI	AATT	2 cut(s)	54, 247
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	170
TscAI	CASTG	2 cut(s)	130, 145
TseI	GCWGC	2 cut(s)	230, 233
TspRI	CASTG	2 cut(s)	130, 145
Van91I	CCANNNNNTGG	1 cut(s)	212
XceI	RCATGY	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.