Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0028900

Physical Location & Seq

Genomic Coordinates Reverse (-)

20809209 .. 20811081

Gene Structure 1873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1176100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGTGATGGCTGAGAATGAAGTTGGGGATGACCAGAGGGACCTCAACGTCAATGGCGGCGGGCCCAAGTCCCCATGGAGGACTCCGGTCTCCCTTGATGCTCCCGTCATGGCCGCCGAATCCTGGCCTGCTCTGGCCGATGCCCACAGGCCCAAGAGTCTGGATGCTGCTGCAAAGCCGCCAGCTGCGCAGCCGTCTGCCCCGCCCGCGCCTGCGCAGGGATTAGTCATGCAGAAGTTGAATGAGTCTGGAAACTCTAACGCTTCGCACAAGCATTCATCATCACATCACGAAAAAAGGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

102

Amino Acids

10.59

Weight (kDa)

6.49

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028900)

Species	Orthologous Gene IDs
malus_domestica	MD11G1176100.v1.1
pyrus_communis	pycom11g15990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
Acc16I	TGCGCA	2 cut(s)	189, 216
AccII	CGCG	1 cut(s)	209
AciI	CCGC	6 cut(s)	57, 60, 114, 179, 203, 207
AcoI	YGGCCR	2 cut(s)	111, 135
AfiI	CCNNNNNNNGG	3 cut(s)	78, 123, 218
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	94
AoxI	GGCC	5 cut(s)	62, 111, 125, 135, 149
ApaI	GGGCCC	1 cut(s)	66
ApeKI	GCWGC	4 cut(s)	167, 170, 185, 190
AspLEI	GCGC	3 cut(s)	190, 211, 217
AspS9I	GGNCC	5 cut(s)	40, 62, 63, 150, 300
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	40, 300
BaeGI	GKGCMC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	66
BbvI	GCAGC	4 cut(s)	154, 157, 172, 202
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	304
BisI	GCNGC	7 cut(s)	58, 114, 168, 171, 179, 186, 191
BlsI	GCNGC	7 cut(s)	59, 115, 169, 172, 180, 187, 192
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	2 cut(s)	40, 300
BmgT120I	GGNCC	5 cut(s)	40, 62, 63, 150, 300
BmiI	GGNNCC	2 cut(s)	41, 64
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	3 cut(s)	88, 130, 154
BoxI	GACNNNNGTC	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 123, 218
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	2 cut(s)	34, 169
BseLI	CCNNNNNNNGG	3 cut(s)	78, 123, 218
BseSI	GKGCMC	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	154, 157, 172, 202
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	5 cut(s)	64, 113, 127, 137, 151
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	2 cut(s)	53, 55
BslI	CCNNNNNNNGG	3 cut(s)	78, 123, 218
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	2 cut(s)	53, 55
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	5 cut(s)	64, 113, 127, 137, 151
Bso31I	GGTCTC	1 cut(s)	94
Bsp120I	GGGCCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp19I	CCATGG	1 cut(s)	74
BspACI	CCGC	6 cut(s)	57, 60, 114, 179, 203, 207
BspANI	GGCC	5 cut(s)	64, 113, 127, 137, 151
BspCNI	CTCAG	1 cut(s)	4
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	41, 64
BspTNI	GGTCTC	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	124
BstC8I	GCNNGC	5 cut(s)	62, 129, 183, 207, 213
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	34, 169
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	3 cut(s)	190, 211, 217
BstMAI	GTCTC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 206
BstNI	CCWGG	1 cut(s)	124
BstPAI	GACNNNNGTC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	122
BstSLI	GKGCMC	1 cut(s)	66
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	4 cut(s)	154, 157, 172, 202
BstXI	CCANNNNNNTGG	1 cut(s)	160
BsuRI	GGCC	5 cut(s)	64, 113, 127, 137, 151
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	34, 169
Cac8I	GCNNGC	5 cut(s)	62, 129, 183, 207, 213
CfoI	GCGC	3 cut(s)	190, 211, 217
Cfr13I	GGNCC	5 cut(s)	40, 62, 63, 150, 300
CviAII	CATG	3 cut(s)	75, 109, 229
CviJI	RGCY	9 cut(s)	11, 64, 113, 127, 137, 151, 178, 185, 193
CviKI_1	RGCY	9 cut(s)	11, 64, 113, 127, 137, 151, 178, 185, 193
DdeI	CTNAG	1 cut(s)	12
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	2 cut(s)	111, 135
Eco130I	CCWWGG	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	40, 300
EcoO109I	RGGNCCY	2 cut(s)	40, 300
EcoRII	CCWGG	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	3 cut(s)	78, 112, 232
FaiI	YATR	3 cut(s)	76, 110, 230
FaqI	GGGAC	2 cut(s)	53, 55
FatI	CATG	3 cut(s)	74, 108, 228
FauI	CCCGC	3 cut(s)	53, 210, 214
Fnu4HI	GCNGC	7 cut(s)	58, 114, 168, 171, 179, 186, 191
FokI	GGATG	2 cut(s)	41, 176
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	7 cut(s)	58, 114, 168, 171, 179, 186, 191
FspBI	CTAG	1 cut(s)	304
FspI	TGCGCA	2 cut(s)	189, 216
GlaI	GCGC	3 cut(s)	189, 210, 216
GluI	GCNGC	7 cut(s)	58, 114, 168, 171, 179, 186, 191
HaeIII	GGCC	5 cut(s)	64, 113, 127, 137, 151
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	3 cut(s)	190, 211, 217
Hin1II	CATG	3 cut(s)	78, 112, 232
Hin6I	GCGC	3 cut(s)	188, 209, 215
HinP1I	GCGC	3 cut(s)	188, 209, 215
HinfI	GANTC	4 cut(s)	82, 119, 157, 245
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	16
Hpy188III	TCNNGA	3 cut(s)	161, 249, 290
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	173, 232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 206
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	3 cut(s)	78, 112, 232
HspAI	GCGC	3 cut(s)	188, 209, 215
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	4 cut(s)	154, 157, 172, 202
LweI	GCATC	3 cut(s)	88, 130, 154
MaeI	CTAG	1 cut(s)	304
MaeII	ACGT	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	66
MlyI	GAGTC	3 cut(s)	76, 166, 254
MnlI	CCTC	3 cut(s)	30, 53, 72
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	124
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	124
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	187, 206
NcoI	CCATGG	1 cut(s)	74
NlaIII	CATG	3 cut(s)	78, 112, 232
NlaIV	GGNNCC	2 cut(s)	41, 64
NsbI	TGCGCA	2 cut(s)	189, 216
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	7 cut(s)	59, 115, 169, 172, 180, 187, 192
PleI	GAGTC	3 cut(s)	76, 165, 253
PpsI	GAGTC	3 cut(s)	76, 165, 253
PpuMI	RGGWCCY	2 cut(s)	40, 300
PshAI	GACNNNNGTC	1 cut(s)	86
Psp5II	RGGWCCY	2 cut(s)	40, 300
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	41, 64
PspOMI	GGGCCC	1 cut(s)	62
PspPI	GGNCC	5 cut(s)	40, 62, 63, 150, 300
PspPPI	RGGWCCY	2 cut(s)	40, 300
PvuII	CAGCTG	1 cut(s)	185
SatI	GCNGC	7 cut(s)	58, 114, 168, 171, 179, 186, 191
Sau96I	GGNCC	5 cut(s)	40, 62, 63, 150, 300
SchI	GAGTC	3 cut(s)	76, 166, 254
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	4 cut(s)	45, 51, 187, 302
SfaNI	GCATC	3 cut(s)	88, 130, 154
SinI	GGWCC	2 cut(s)	40, 300
SsiI	CCGC	6 cut(s)	57, 60, 114, 179, 203, 207
SspMI	CTAG	1 cut(s)	304
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	74
TaiI	ACGT	1 cut(s)	51
TauI	GCSGC	3 cut(s)	60, 116, 181
TfiI	GAWTC	1 cut(s)	119
TseI	GCWGC	4 cut(s)	167, 170, 185, 190
TspDTI	ATGAA	2 cut(s)	33, 267
VpaK11BI	GGWCC	2 cut(s)	40, 300
XspI	CTAG	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.