Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0028900

Physical Location & Seq

Genomic Coordinates Reverse (-)

17172062 .. 17172331

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g15990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGTGATGGTTGAGAATGAAGTTGGGGATGACCAGAGGGACCTCAATGTCAATGGCGGCGGGCCCAAGTCCGCATGGAGGACTCCGGTCTCCTTTGATGCTCCCCTCATGGCCGCCGAATCCTGGCCTGCTCTGGCCGATGCCCACAGGCCCAAGAGTCTGAATGCTGCCGCAAAGCCTCCAGCTGCACAGCCGTTTCCCCTGCCCGCGCCTGTGCAGGTAATTCCAGTGAAGCTGTTTGGTACTTGTTTGAAATGTGTAAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

90

Amino Acids

9.45

Weight (kDa)

7.8

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028900)

Species	Orthologous Gene IDs
malus_domestica	MD11G1176100.v1.1
pyrus_communis	pycom11g15990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	268
AasI	GACNNNNNNGTC	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	208
AccII	CGCG	1 cut(s)	209
AciI	CCGC	6 cut(s)	57, 60, 72, 114, 171, 207
AcoI	YGGCCR	2 cut(s)	111, 135
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	78, 123
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	2 cut(s)	185, 235
AluI	AGCT	2 cut(s)	185, 235
Alw26I	GTCTC	1 cut(s)	94
AoxI	GGCC	5 cut(s)	62, 111, 125, 135, 149
ApaI	GGGCCC	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	167, 185
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	4 cut(s)	40, 62, 63, 150
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	154, 172
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	5 cut(s)	58, 114, 168, 171, 186
BlsI	GCNGC	5 cut(s)	59, 115, 169, 172, 187
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	4 cut(s)	40, 62, 63, 150
BmiI	GGNNCC	2 cut(s)	41, 64
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	2 cut(s)	88, 130
BoxI	GACNNNNGTC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 123
Bse1I	ACTGG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	2 cut(s)	78, 123
BseNI	ACTGG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	154, 172
BsgI	GTGCAG	2 cut(s)	171, 236
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	5 cut(s)	64, 113, 127, 137, 151
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	78, 123
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	5 cut(s)	64, 113, 127, 137, 151
Bso31I	GGTCTC	1 cut(s)	94
Bsp120I	GGGCCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	66
BspACI	CCGC	6 cut(s)	57, 60, 72, 114, 171, 207
BspANI	GGCC	5 cut(s)	64, 113, 127, 137, 151
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	41, 64
BspMI	ACCTGC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	124
BstC8I	GCNNGC	3 cut(s)	62, 129, 207
BstF5I	GGATG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	94
BstNI	CCWGG	1 cut(s)	124
BstPAI	GACNNNNGTC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	122
BstSLI	GKGCMC	1 cut(s)	66
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	2 cut(s)	154, 172
BsuRI	GGCC	5 cut(s)	64, 113, 127, 137, 151
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	3 cut(s)	62, 129, 207
CfoI	GCGC	1 cut(s)	211
Cfr13I	GGNCC	4 cut(s)	40, 62, 63, 150
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	2 cut(s)	75, 109
CviJI	RGCY	9 cut(s)	64, 113, 127, 137, 151, 178, 185, 193, 235
CviKI_1	RGCY	9 cut(s)	64, 113, 127, 137, 151, 178, 185, 193, 235
CviQI	GTAC	1 cut(s)	243
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	2 cut(s)	111, 135
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	2 cut(s)	78, 112
FaiI	YATR	3 cut(s)	76, 110, 268
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	2 cut(s)	74, 108
FauI	CCCGC	2 cut(s)	53, 214
Fnu4HI	GCNGC	5 cut(s)	58, 114, 168, 171, 186
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	5 cut(s)	58, 114, 168, 171, 186
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	5 cut(s)	58, 114, 168, 171, 186
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	5 cut(s)	64, 113, 127, 137, 151
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	2 cut(s)	78, 112
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HinfI	GANTC	3 cut(s)	82, 119, 157
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	188, 217
Hsp92II	CATG	2 cut(s)	78, 112
HspAI	GCGC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	2 cut(s)	154, 172
LweI	GCATC	2 cut(s)	88, 130
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	2 cut(s)	222, 263
MlyI	GAGTC	2 cut(s)	76, 166
MnlI	CCTC	5 cut(s)	30, 53, 72, 116, 189
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	124
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	124
MvnI	CGCG	1 cut(s)	209
NlaIII	CATG	2 cut(s)	78, 112
NlaIV	GGNNCC	2 cut(s)	41, 64
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	5 cut(s)	59, 115, 169, 172, 187
PleI	GAGTC	2 cut(s)	76, 165
PpsI	GAGTC	2 cut(s)	76, 165
PpuMI	RGGWCCY	1 cut(s)	40
PshAI	GACNNNNGTC	1 cut(s)	86
PsiI	TTATAA	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	41, 64
PspOMI	GGGCCC	1 cut(s)	62
PspPI	GGNCC	4 cut(s)	40, 62, 63, 150
PspPPI	RGGWCCY	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SatI	GCNGC	5 cut(s)	58, 114, 168, 171, 186
Sau96I	GGNCC	4 cut(s)	40, 62, 63, 150
SchI	GAGTC	2 cut(s)	76, 166
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	4 cut(s)	45, 187, 222, 237
SfaNI	GCATC	2 cut(s)	88, 130
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	2 cut(s)	222, 263
SsiI	CCGC	6 cut(s)	57, 60, 72, 114, 171, 207
StyD4I	CCNGG	1 cut(s)	122
TasI	AATT	2 cut(s)	222, 263
TauI	GCSGC	3 cut(s)	60, 116, 173
TfiI	GAWTC	1 cut(s)	119
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	2 cut(s)	167, 185
TspDTI	ATGAA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.