Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0024491

Physical Location & Seq

Genomic Coordinates Reverse (-)

28060287 .. 28061227

Gene Structure 941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1195900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTTAAATAGTTTACTTGCGTGTTATACTGATGGCAAGTTGGGGACGAATGATGTTTATCTGAACGAGATTAACGGGTGGGTCAGCATGTATGAGGTTGGCAAGTTGGTGATGGTTTTGAATGCAGAGAAAGTGTTTGATGAAATAGCTAAGAGACAAGAAGAGGACGCTGCAGGAAACCTCTTCGATCGAATGACCCCTCTTTTTCATAACATGGTTGTATGCTGTCAATTTTGCTTAACTATAGGTGCATTCTGGATTGGATGGGATCCGGGAGGGGGATTGGCTAAAATTCTAGGGATGATGCTCTGTTCCAAGCACCAGGCGAACCATTGTGACAAGTCCTTTATTGTTGCCGGCAAGGCTGAGGAACTATTACTACCATCAAGGGATGATGAAAAATCGTGTACCAATATGTGTCACAACACGAGGGAGTGGCACCGCGATGTGATTAGGAAGATCAAATGGCTGAGTGAGAAGGGGATTTCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0008104 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0017038 GO:0022402 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032153 GO:0032506 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0061640 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

LRR_6 WPP

Protein Analysis

165

Amino Acids

18.54

Weight (kDa)

5.94

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024491)

Species	Orthologous Gene IDs
malus_domestica	MD11G1195900.v1.1
pyrus_communis	pycom03g15140 pycom05g08840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	438
AccII	CGCG	1 cut(s)	444
AciI	CCGC	1 cut(s)	442
AclWI	GGATC	2 cut(s)	263, 276
AcsI	RAATTY	1 cut(s)	291
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	2 cut(s)	263, 276
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	291
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	121
BamHI	GGATCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	438
BauI	CACGAG	1 cut(s)	427
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	4 cut(s)	26, 106, 258, 391
BciT130I	CCWGG	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	2 cut(s)	171, 243
BglI	GCCNNNNNGGC	1 cut(s)	362
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	273, 323
BmiI	GGNNCC	2 cut(s)	270, 440
BmrFI	CCNGG	2 cut(s)	273, 323
BmsI	GCATC	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse118I	RCCGGY	1 cut(s)	356
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	323
BseGI	GGATG	3 cut(s)	269, 306, 397
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	2 cut(s)	357, 461
BseXI	GCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	444
Bsh1285I	CGRYCG	1 cut(s)	190
BshNI	GGYRCC	1 cut(s)	438
BsiEI	CGRYCG	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	272, 357
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	2 cut(s)	127, 251
Bsp143I	GATC	3 cut(s)	187, 268, 459
BspACI	CCGC	1 cut(s)	442
BspCNI	CTCAG	2 cut(s)	358, 462
BspFNI	CGCG	1 cut(s)	444
BspLI	GGNNCC	2 cut(s)	270, 440
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	2 cut(s)	263, 276
BspT107I	GGYRCC	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
BssMI	GATC	3 cut(s)	187, 268, 459
BssSI	CACGAG	1 cut(s)	427
Bst2BI	CACGAG	1 cut(s)	427
Bst2UI	CCWGG	1 cut(s)	323
Bst6I	CTCTTC	2 cut(s)	156, 188
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	3 cut(s)	150, 366, 470
BstF5I	GGATG	3 cut(s)	269, 306, 397
BstFNI	CGCG	1 cut(s)	444
BstKTI	GATC	3 cut(s)	190, 271, 462
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	3 cut(s)	187, 268, 459
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	2 cut(s)	271, 321
BstSFI	CTRYAG	2 cut(s)	171, 243
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	3 cut(s)	269, 306, 397
Cac8I	GCNNGC	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	356
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	3 cut(s)	88, 214, 492
CviJI	RGCY	4 cut(s)	149, 287, 365, 469
CviKI_1	RGCY	4 cut(s)	149, 287, 365, 469
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	3 cut(s)	150, 366, 470
DpnI	GATC	3 cut(s)	189, 270, 461
DpnII	GATC	3 cut(s)	187, 268, 459
Eam1104I	CTCTTC	2 cut(s)	156, 188
EarI	CTCTTC	2 cut(s)	156, 188
EcoRII	CCWGG	1 cut(s)	321
FaeI	CATG	3 cut(s)	91, 217, 495
FaiI	YATR	9 cut(s)	27, 89, 93, 210, 215, 223, 245, 416, 493
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	3 cut(s)	87, 213, 491
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	3 cut(s)	276, 313, 404
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	1 cut(s)	171
HapII	CCGG	2 cut(s)	272, 357
HgaI	GACGC	1 cut(s)	176
Hin1II	CATG	3 cut(s)	91, 217, 495
HpaII	CCGG	2 cut(s)	272, 357
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	2 cut(s)	14, 408
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	2 cut(s)	14, 408
HpyAV	CCTTC	1 cut(s)	472
HpyCH4V	TGCA	3 cut(s)	125, 173, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	3 cut(s)	150, 366, 470
Hsp92II	CATG	3 cut(s)	91, 217, 495
KroI	GCCGGC	1 cut(s)	356
KroNI	GCCGGC	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	187, 268, 459
LpnPI	CCDG	6 cut(s)	159, 241, 285, 308, 335, 370
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	335, 419
MalI	GATC	3 cut(s)	189, 270, 461
MboI	GATC	3 cut(s)	187, 268, 459
MboII	GAAGA	3 cut(s)	173, 175, 469
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	2 cut(s)	230, 291
MnlI	CCTC	7 cut(s)	88, 157, 191, 210, 269, 361, 423
MroNI	GCCGGC	1 cut(s)	356
MseI	TTAA	3 cut(s)	5, 72, 239
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	2 cut(s)	272, 357
MspR9I	CCNGG	2 cut(s)	273, 323
Mva1269I	GAATGC	2 cut(s)	127, 251
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	362
NaeI	GCCGGC	1 cut(s)	358
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	3 cut(s)	187, 268, 459
NgoMIV	GCCGGC	1 cut(s)	356
NlaIII	CATG	3 cut(s)	91, 217, 495
NlaIV	GGNNCC	2 cut(s)	270, 440
NmuCI	GTSAC	2 cut(s)	335, 419
NspI	RCATGY	1 cut(s)	91
PctI	GAATGC	2 cut(s)	127, 251
PdiI	GCCGGC	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	172
Ple19I	CGATCG	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	270, 440
PsrI	GAACNNNNNNTAC	2 cut(s)	363, 395
PstI	CTGCAG	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	268
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	3 cut(s)	5, 72, 239
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	3 cut(s)	187, 268, 459
ScrFI	CCNGG	2 cut(s)	273, 323
SetI	ASST	4 cut(s)	99, 151, 183, 250
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	2 cut(s)	171, 243
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	2 cut(s)	230, 291
SsiI	CCGC	1 cut(s)	442
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	271, 321
TaqI	TCGA	2 cut(s)	186, 190
TasI	AATT	2 cut(s)	230, 291
Tru1I	TTAA	3 cut(s)	5, 72, 239
Tru9I	TTAA	3 cut(s)	5, 72, 239
TseFI	GTSAC	2 cut(s)	335, 419
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	2 cut(s)	335, 419
TspDTI	ATGAA	3 cut(s)	156, 197, 411
XapI	RAATTY	1 cut(s)	291
XceI	RCATGY	1 cut(s)	91
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.