pycom03g15140

ultraviolet-B receptor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
16482104 .. 16482604
501 bp
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UTR
Exon/CDS
Intron
pycom03g15140.1

Sequence Viewer

Length: 501 bp
ATGCTTCAATGGCATCCTACACCAATAATAGCAAACCATTTTTTAGCAGCTCCAACAAGTGTGCAGTGTTTGGGTTTAACTCACAGTAATGAAGAAGCCAAAGCTTCAGGCCCTTTTCAATGGTTACTGCATGACGCCAGTGATAACATCAACATTAAGGGCTATGGAGAACCCAAGAGTGTCAAATTACATATTCTTTGCCTTTGCAAGCAGCCGTCAACGAATACAAACACCACCAAACGTAGACATGAGGTATTGAGATCTTTGATTTACAAGTTTAAAAATCGGAAGGCCATGTGGCATTGGTTTTTCCATAGTTTCTTTGCGTGTTATACTAATTTCAAGGTGGTCATGAATGATGCTTATTTGAATAAGATAAATGGTTGGGTCAGCATGTATGAGGTTGGCAAGTTTGTGATGGTTTTGAATGCGGACAAAGTGTTCGATGAAATAGCTAAGATACAAAATGAGGTTGGCAAATTTGTGATGGTTAGTAGCTGA

Protein Analysis

167

Amino Acids

19.14

Weight (kDa)

9.3

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024491)

Species Orthologous Gene IDs
malus_domestica MD11G1195900.v1.1
pyrus_communis pycom03g15140 pycom05g08840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 244
AciI CCGC 1 cut(s) 431
AcsI RAATTY 1 cut(s) 479
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 135
AgsI TTSAA 5 cut(s) 8, 119, 343, 370, 427
AloI GAACNNNNNNTCC 2 cut(s) 425, 457
AluBI AGCT 4 cut(s) 50, 104, 455, 498
AluI AGCT 4 cut(s) 50, 104, 455, 498
AoxI GGCC 2 cut(s) 109, 291
ApeKI GCWGC 2 cut(s) 47, 211
ApoI RAATTY 1 cut(s) 479
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
AspS9I GGNCC 1 cut(s) 110
BbvI GCAGC 2 cut(s) 59, 223
BccI CCATC 2 cut(s) 412, 481
BceAI ACGGC 1 cut(s) 199
BglII AGATCT 1 cut(s) 260
BisI GCNGC 2 cut(s) 48, 212
BlsI GCNGC 2 cut(s) 49, 213
BmgT120I GGNCC 1 cut(s) 110
BmsI GCATC 2 cut(s) 22, 349
BsaHI GRCGYC 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 13
BseNI ACTGG 1 cut(s) 138
BseXI GCAGC 2 cut(s) 59, 223
BsgI GTGCAG 1 cut(s) 83
BshFI GGCC 2 cut(s) 111, 293
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 2 cut(s) 111, 293
Bsp143I GATC 1 cut(s) 260
BspACI CCGC 1 cut(s) 431
BspANI GGCC 2 cut(s) 111, 293
BspHI TCATGA 1 cut(s) 351
BsrI ACTGG 1 cut(s) 138
BssMI GATC 1 cut(s) 260
BssNI GRCGYC 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 456
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 1 cut(s) 263
BstMBI GATC 1 cut(s) 260
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 397
BstV1I GCAGC 2 cut(s) 59, 223
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuRI GGCC 2 cut(s) 111, 293
BtsCI GGATG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 71, 145
Cac8I GCNNGC 1 cut(s) 209
CciI TCATGA 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 110
CseI GACGC 1 cut(s) 143
CviAII CATG 5 cut(s) 131, 248, 295, 352, 394
CviJI RGCY 9 cut(s) 50, 98, 104, 111, 162, 214, 293, 455, 498
CviKI_1 RGCY 9 cut(s) 50, 98, 104, 111, 162, 214, 293, 455, 498
DdeI CTNAG 1 cut(s) 456
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
DraI TTTAAA 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 110
FaeI CATG 5 cut(s) 134, 251, 298, 355, 397
FatI CATG 5 cut(s) 130, 247, 294, 351, 393
FblI GTMKAC 1 cut(s) 244
Fnu4HI GCNGC 2 cut(s) 48, 212
Fsp4HI GCNGC 2 cut(s) 48, 212
GluI GCNGC 2 cut(s) 48, 212
HaeIII GGCC 2 cut(s) 111, 293
HgaI GACGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 5 cut(s) 134, 251, 298, 355, 397
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 102
Hpy166II GTNNAC 2 cut(s) 219, 245
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 1 cut(s) 352
Hpy8I GTNNAC 2 cut(s) 219, 245
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 64, 130, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 1 cut(s) 241
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 5 cut(s) 134, 251, 298, 355, 397
Kzo9I GATC 1 cut(s) 260
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 2 cut(s) 93, 151
Lsp1109I GCAGC 2 cut(s) 59, 223
LweI GCATC 2 cut(s) 22, 349
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 123
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 1 cut(s) 104
MflI RGATCY 1 cut(s) 260
MluCI AATT 3 cut(s) 185, 337, 479
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 3 cut(s) 244, 394, 463
MseI TTAA 3 cut(s) 77, 156, 279
MslI CAYNNNNRTG 1 cut(s) 87
Mva1269I GAATGC 1 cut(s) 433
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 260
NlaIII CATG 5 cut(s) 134, 251, 298, 355, 397
NspI RCATGY 1 cut(s) 397
PagI TCATGA 1 cut(s) 351
PctI GAATGC 1 cut(s) 433
PkrI GCNGC 2 cut(s) 49, 213
PspPI GGNCC 1 cut(s) 110
PsuI RGATCY 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 3 cut(s) 77, 156, 279
SatI GCNGC 2 cut(s) 48, 212
Sau3AI GATC 1 cut(s) 260
Sau96I GGNCC 1 cut(s) 110
SetI ASST 9 cut(s) 52, 106, 244, 255, 348, 405, 457, 474, 500
SfaNI GCATC 2 cut(s) 22, 349
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 3 cut(s) 185, 337, 479
SsiI CCGC 1 cut(s) 431
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 444
TasI AATT 3 cut(s) 185, 337, 479
Tru1I TTAA 3 cut(s) 77, 156, 279
Tru9I TTAA 3 cut(s) 77, 156, 279
TscAI CASTG 2 cut(s) 71, 145
TseI GCWGC 2 cut(s) 47, 211
TspDTI ATGAA 3 cut(s) 105, 368, 462
TspRI CASTG 2 cut(s) 71, 145
XapI RAATTY 1 cut(s) 479
XceI RCATGY 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.