MD11G1196800.v1.1

Phosphoribulokinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0024240
Physical Location & Seq
Reverse (-)
28275746 .. 28276840
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1196800.v1.1.491

Sequence Viewer

Length: 183 bp
ATGATAAGGCCGTTAGACTCCAACATGCTCATCAACAACATCACGACGGTGATATGCTTGGATGATTACCATTCCCTAGACAGGGCAGGGAGGAAGAAGAAAGGAGTGACAAAGTCAGATCCAAGAGCTAACGACTTCGATCTAACACTAGACCCAATAGCCTACCTGTTTTCAGTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004849 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008655 GO:0008974 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010319 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0019904 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042455 GO:0042651 GO:0042742 GO:0042802 GO:0042803 GO:0043094 GO:0043097 GO:0043174 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0046983 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:0097718 GO:0098542 GO:0099080 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659
KEGG Pathways
Metabolic & Signaling
ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200
Pfam Domains
Protein Families
PRK

Protein Analysis

61

Amino Acids

6.77

Weight (kDa)

6.52

Isoelectric Point (pI)

24.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRK PF00485 10 - 50 2e-06 Phosphoribulokinase / Uridine kinase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024240)

Species Orthologous Gene IDs
malus_domestica MD11G1196800.v1.1 MD13G1246600.v1.1
pyrus_communis pycom11g16980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 81, 82
AleI CACNNNNGTG 1 cut(s) 47
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AlwI GGATC 1 cut(s) 113
AoxI GGCC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 61
BfaI CTAG 2 cut(s) 77, 149
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 82
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 2 cut(s) 81, 82
BshFI GGCC 1 cut(s) 10
BslI CCNNNNNNNGG 2 cut(s) 81, 82
BsnI GGCC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 118, 139
BspANI GGCC 1 cut(s) 10
BspPI GGATC 1 cut(s) 113
BssMI GATC 2 cut(s) 118, 139
Bst4CI ACNGT 1 cut(s) 49
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 2 cut(s) 121, 142
BstMBI GATC 2 cut(s) 118, 139
BstNSI RCATGY 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 67
CviAII CATG 1 cut(s) 25
CviJI RGCY 3 cut(s) 10, 128, 161
CviKI_1 RGCY 3 cut(s) 10, 128, 161
DpnI GATC 2 cut(s) 120, 141
DpnII GATC 2 cut(s) 118, 139
FaeI CATG 1 cut(s) 28
FaiI YATR 3 cut(s) 26, 55, 181
FatI CATG 1 cut(s) 24
FokI GGATG 1 cut(s) 74
FspBI CTAG 2 cut(s) 77, 149
HaeIII GGCC 1 cut(s) 10
Hin1II CATG 1 cut(s) 28
HinfI GANTC 1 cut(s) 17
HphI GGTGA 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 49
Hsp92II CATG 1 cut(s) 28
Kzo9I GATC 2 cut(s) 118, 139
LpnPI CCDG 3 cut(s) 67, 72, 179
MaeI CTAG 2 cut(s) 77, 149
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 120, 141
MboI GATC 2 cut(s) 118, 139
MboII GAAGA 2 cut(s) 106, 109
MflI RGATCY 1 cut(s) 118
MlyI GAGTC 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 47
NdeII GATC 2 cut(s) 118, 139
NlaIII CATG 1 cut(s) 28
NmuCI GTSAC 1 cut(s) 106
NspI RCATGY 1 cut(s) 28
OliI CACNNNNGTG 1 cut(s) 47
PflFI GACNNNGTC 1 cut(s) 112
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PsuI RGATCY 1 cut(s) 118
PsyI GACNNNGTC 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 47
Sau3AI GATC 2 cut(s) 118, 139
SchI GAGTC 1 cut(s) 11
SetI ASST 2 cut(s) 130, 168
SgeI CNNG 9 cut(s) 37, 55, 70, 89, 94, 99, 135, 161, 178
SmiMI CAYNNNNRTG 1 cut(s) 47
SspMI CTAG 2 cut(s) 77, 149
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 1 cut(s) 138
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 168
Tth111I GACNNNGTC 1 cut(s) 112
XceI RCATGY 1 cut(s) 28
XspI CTAG 2 cut(s) 77, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.