Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0028916

Physical Location & Seq

Genomic Coordinates Forward (+)

30033725 .. 30034629

Gene Structure 905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1205600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTTTTCGGAATCAGGCATGGGGTCTGCTGGAGCAGCATTTCTTGCTTCTGCTCTTAAGGTGAATGAGAGGTTGGAGGAGTTGCAGATATGGGAAGACTCAATTGGGTCGAAAGGCGCAGAGGAGCTCTCGAAGATGATTGAAGTGAACTCAACCCTGAAGGTGTTGACGATTTTTTACTCGAATTCAATCACTGCAACTCCACTTGTTTCTGCAGTTTTAGCAAGAAATAGGACTGTGCAAGTCCATGTTTGGAGTGGAGAAAACGGAGAAAGAAGTTCGAAGGTGGTTGAATTTCTACCCGAAAACAGCACACTTAGAATTTACAGGCTTGATCTTTTGGGTGCTTGCAGGGTTGCCTGCGCTCTCGGGTGGAACTCAACTGTCAAGTCACTCTACCTTACTGGAGTGGGGTTGAAGTCACGATGGGCAAAGAAGTTTCGATGGGTTTTGGAACAGAACCAGAGCCTCAAAGAGGTAATTTTGTCGAAAACTTGGCTGAAAGATAAGGAAGTTGTGTATGTAGCAGCTGGACTCTTCAAAAACCAGAGCTTGGAGAGCTTGTATTTAGATGGAAACGTGTTTGGAGGCATCGGAGTTGAGCATTTACTCTGCCCTTTGAGCAGGTTCTCTGCCTTGCAATATCAAGCAAACATTACTTTAAAAGCGGTAACACTTGGGGTTGGAAGAACCAAGATTGGGAGGGAGGGACTTGTAGCCATTTTACAGATGCTGACAACCAACGAAAGTTTAACGCGATTAGGGATATACGATGATGAAAATTTAAGGCCCGATGATTTTGTTAAACTCTTCAAAACCTTGGAGAAGAATGCCAGCTTGAGACACTTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009825 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009956 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010305 GO:0010540 GO:0010817 GO:0016049 GO:0032501 GO:0032502 GO:0040007 GO:0048366 GO:0048367 GO:0048507 GO:0048532 GO:0048731 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COR LRR_6 Roc

Protein Analysis

285

Amino Acids

31.52

Weight (kDa)

9.02

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028916)

Species	Orthologous Gene IDs
malus_domestica	MD11G1205600.v1.1
rosa_multiflora	Rmu_sc0035651.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	615
AccB7I	CCANNNNNTGG	1 cut(s)	553
AccII	CGCG	1 cut(s)	757
AciI	CCGC	1 cut(s)	668
AcsI	RAATTY	4 cut(s)	184, 293, 321, 781
AcuI	CTGAAG	1 cut(s)	179
AfiI	CCNNNNNNNGG	3 cut(s)	475, 553, 699
AflII	CTTAAG	1 cut(s)	56
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	6 cut(s)	143, 189, 293, 418, 541, 814
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 87, 88, 119
AluBI	AGCT	5 cut(s)	127, 530, 552, 561, 837
AluI	AGCT	5 cut(s)	127, 530, 552, 561, 837
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	1 cut(s)	835
AlwNI	CAGNNNCTG	1 cut(s)	733
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	788
ApeKI	GCWGC	2 cut(s)	35, 527
ApoI	RAATTY	4 cut(s)	184, 293, 321, 781
AspLEI	GCGC	2 cut(s)	119, 365
AspS9I	GGNCC	1 cut(s)	789
AsuHPI	GGTGA	1 cut(s)	73
AsuII	TTCGAA	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	47, 539
BccI	CCATC	3 cut(s)	420, 438, 566
BcoDI	GTCTC	1 cut(s)	835
BfmI	CTRYAG	1 cut(s)	213
BfrI	CTTAAG	1 cut(s)	56
BfuAI	ACCTGC	1 cut(s)	615
BisI	GCNGC	2 cut(s)	36, 528
BlsI	GCNGC	2 cut(s)	37, 529
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	789
BmsI	GCATC	2 cut(s)	600, 720
BpiI	GAAGAC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	2 cut(s)	51, 426
Bpu14I	TTCGAA	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	819
BsaXI	ACNNNNNCTCC	4 cut(s)	184, 214, 548, 578
Bsc4I	CCNNNNNNNGG	3 cut(s)	475, 553, 699
Bse1I	ACTGG	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	819
BseLI	CCNNNNNNNGG	3 cut(s)	475, 553, 699
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	2 cut(s)	92, 137
BseXI	GCAGC	2 cut(s)	47, 539
Bsh1236I	CGCG	1 cut(s)	757
BshFI	GGCC	1 cut(s)	790
BsiHKAI	GWGCWC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	723
BslI	CCNNNNNNNGG	3 cut(s)	475, 553, 699
BsmAI	GTCTC	1 cut(s)	835
BsmFI	GGGAC	1 cut(s)	723
BsmI	GAATGC	1 cut(s)	835
BsnI	GGCC	1 cut(s)	790
BsoBI	CYCGRG	1 cut(s)	368
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	1 cut(s)	668
BspANI	GGCC	1 cut(s)	790
BspFNI	CGCG	1 cut(s)	757
BspMAI	CTGCAG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	615
BspT104I	TTCGAA	1 cut(s)	281
BspTI	CTTAAG	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	819
BssMI	GATC	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	819
Bst4CI	ACNGT	2 cut(s)	238, 385
Bst6I	CTCTTC	2 cut(s)	542, 815
BstAFI	CTTAAG	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	3 cut(s)	349, 361, 835
BstDEI	CTNAG	1 cut(s)	317
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstFNI	CGCG	1 cut(s)	757
BstHHI	GCGC	2 cut(s)	119, 365
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	835
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 44, 221, 558, 621
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	1 cut(s)	757
BstV1I	GCAGC	2 cut(s)	47, 539
BstV2I	GAAGAC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	790
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	192
BveI	ACCTGC	1 cut(s)	615
Cac8I	GCNNGC	3 cut(s)	349, 361, 835
CaiI	CAGNNNCTG	1 cut(s)	733
CfoI	GCGC	2 cut(s)	119, 365
Cfr13I	GGNCC	1 cut(s)	789
CviAII	CATG	2 cut(s)	19, 248
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
DraI	TTTAAA	1 cut(s)	663
Eam1104I	CTCTTC	2 cut(s)	542, 815
EarI	CTCTTC	2 cut(s)	542, 815
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	819
Eco24I	GRGCYC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	127
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	819
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	819
FaeI	CATG	2 cut(s)	22, 251
FaiI	YATR	5 cut(s)	20, 91, 249, 522, 769
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	2 cut(s)	18, 247
Fnu4HI	GCNGC	2 cut(s)	36, 528
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	2 cut(s)	36, 528
GlaI	GCGC	2 cut(s)	118, 364
GluI	GCNGC	2 cut(s)	36, 528
GsuI	CTGGAG	2 cut(s)	51, 426
HaeIII	GGCC	1 cut(s)	790
HhaI	GCGC	2 cut(s)	119, 365
Hin1II	CATG	2 cut(s)	22, 251
Hin6I	GCGC	2 cut(s)	117, 363
HinP1I	GCGC	2 cut(s)	117, 363
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	3 cut(s)	11, 98, 534
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	148, 168
Hpy188I	TCNGA	2 cut(s)	10, 596
Hpy188III	TCNNGA	2 cut(s)	130, 423
Hpy8I	GTNNAC	2 cut(s)	148, 168
HpyAV	CCTTC	2 cut(s)	154, 277
HpyCH4III	ACNGT	2 cut(s)	238, 385
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	6 cut(s)	85, 197, 215, 241, 351, 640
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 44, 221, 558, 621
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	2 cut(s)	22, 251
HspAI	GCGC	2 cut(s)	117, 363
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	2 cut(s)	32, 124
Lsp1109I	GCAGC	2 cut(s)	47, 539
LweI	GCATC	2 cut(s)	600, 720
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	3 cut(s)	390, 420, 670
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	6 cut(s)	107, 145, 529, 699, 802, 838
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	6 cut(s)	102, 184, 293, 321, 480, 781
MlyI	GAGTC	2 cut(s)	92, 528
MmeI	TCCRAC	2 cut(s)	54, 664
MnlI	CCTC	8 cut(s)	63, 70, 115, 469, 479, 581, 696, 700
MseI	TTAA	5 cut(s)	57, 662, 752, 785, 804
MspA1I	CMGCKG	1 cut(s)	530
MspCI	CTTAAG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	835
MvnI	CGCG	1 cut(s)	757
MwoI	GCNNNNNNNGC	5 cut(s)	35, 44, 221, 558, 621
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	2 cut(s)	22, 251
NmuCI	GTSAC	2 cut(s)	390, 420
NspV	TTCGAA	1 cut(s)	281
PctI	GAATGC	1 cut(s)	835
PfeI	GAWTC	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	553
PkrI	GCNGC	2 cut(s)	37, 529
PleI	GAGTC	2 cut(s)	92, 528
PpsI	GAGTC	2 cut(s)	92, 528
Psp124BI	GAGCTC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	789
PstI	CTGCAG	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	733
PvuII	CAGCTG	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	5 cut(s)	57, 662, 752, 785, 804
SatI	GCNGC	2 cut(s)	36, 528
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	1 cut(s)	789
SchI	GAGTC	2 cut(s)	92, 528
SduI	GDGCHC	1 cut(s)	129
SfaNI	GCATC	2 cut(s)	600, 720
SfcI	CTRYAG	1 cut(s)	213
SfuI	TTCGAA	1 cut(s)	281
SmlI	CTYRAG	2 cut(s)	56, 838
SmoI	CTYRAG	2 cut(s)	56, 838
Sse9I	AATT	6 cut(s)	102, 184, 293, 321, 480, 781
SsiI	CCGC	1 cut(s)	668
SstI	GAGCTC	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	2 cut(s)	238, 385
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	6 cut(s)	110, 131, 182, 281, 442, 488
TasI	AATT	6 cut(s)	102, 184, 293, 321, 480, 781
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	5 cut(s)	57, 662, 752, 785, 804
Tru9I	TTAA	5 cut(s)	57, 662, 752, 785, 804
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	2 cut(s)	390, 420
TseI	GCWGC	2 cut(s)	35, 527
Tsp45I	GTSAC	2 cut(s)	390, 420
TspDTI	ATGAA	1 cut(s)	792
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	553
Vha464I	CTTAAG	1 cut(s)	56
XagI	CCTNNNNNAGG	1 cut(s)	473
XapI	RAATTY	4 cut(s)	184, 293, 321, 781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.