Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035651.1

Orthogroup ID

OG0028916

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1101

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035651.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1100 bp

atggcaacaagccagaacctcaaagatctccaatgggttctgcaagctctcgaatccgaaagcctcgacctacaaaacatctccttctacctttcacaaccctcttctggctgctaccaggaaaccgagaactccatgaacataaacatttcaaaagacagcctctcttactttcctcagttcctcatagtgttaggaacatccaaagcaatccaattgtctctaagaaacttggagttccaccagatcgaatgggagctccaacaactgcgtgatcttgctgtgttgcttgagtgtaactcaaacatcaagtcagtcatgtttcggagaaacagattcggaagagagtgcatatcagagctatctgaaattctgaagagaaatggagtgatcaaagaggtaatgtttactgaatcaaatgttgggtctgttggagctggatttcttgcttctgcccttaaagtgaatgatagcttggaagagttacagatatgggaagactctattggctctaagggagcagaggaactctcaaagatgattgaagtgaactcaacactgaagctgttgacaatatttgactcgaactcaatcacagcaaccccacttatctctgcggttttagcaaggaatagagctatggaagttcatgtgtggagtggagaaaatggcgaaaagagttctaaggtggttgagtttctacctgaaaatagcacactccgaatttacaggctcgacctttcaggtgcatgcagggttgcctgtgctcttggctggaactcaactgtcaagtcactcgacatgactggggtgcggttaaagtcaagatgggccaaggagtttcgatgggttttggagcaaaaccagagcctcaaagaggtaaatttgtcgaaaacttgcctgaaagataagggagtcatatatgtagcagctggactattcaagaaccagaatttggagagcttgtatttggatggaaacagatttggaggtataggagttgagcatttactctgtcccttgagccggttttctgcactgcaatatcaagcaaacattactttaaagtctgtgacatttggaggtggaagaacaaagat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009825 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009956 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010305 GO:0010540 GO:0010817 GO:0016049 GO:0032501 GO:0032502 GO:0040007 GO:0048366 GO:0048367 GO:0048507 GO:0048532 GO:0048731 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COR LRR_6 Roc

Protein Analysis

366

Amino Acids

40.97

Weight (kDa)

6.85

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028916)

Species	Orthologous Gene IDs
malus_domestica	MD11G1205600.v1.1
rosa_multiflora	Rmu_sc0035651.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	955
AciI	CCGC	2 cut(s)	617, 814
AcsI	RAATTY	4 cut(s)	369, 723, 883, 952
AcuI	CTGAAG	2 cut(s)	395, 581
AfiI	CCNNNNNNNGG	4 cut(s)	107, 877, 955, 1026
AgsI	TTSAA	3 cut(s)	153, 545, 943
AjnI	CCWGG	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	8 cut(s)	405, 437, 458, 489, 490, 521, 938, 970
AluBI	AGCT	9 cut(s)	47, 259, 361, 437, 474, 565, 638, 932, 963
AluI	AGCT	9 cut(s)	47, 259, 361, 437, 474, 565, 638, 932, 963
Alw21I	GWGCWC	2 cut(s)	261, 769
Alw26I	GTCTC	1 cut(s)	225
AoxI	GGCC	1 cut(s)	831
ApeKI	GCWGC	2 cut(s)	111, 929
ApoI	RAATTY	4 cut(s)	369, 723, 883, 952
ArsI	GACNNNNNNTTYG	4 cut(s)	296, 328, 410, 442
AspS9I	GGNCC	1 cut(s)	831
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	504
Bbv12I	GWGCWC	2 cut(s)	261, 769
BbvI	GCAGC	2 cut(s)	98, 941
BccI	CCATC	3 cut(s)	822, 840, 968
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	225
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	2 cut(s)	112, 930
BlsI	GCNGC	2 cut(s)	113, 931
Bme1390I	CCNGG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	831
BmrFI	CCNGG	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	816
BmuI	ACTGGG	1 cut(s)	816
BpiI	GAAGAC	1 cut(s)	504
BplI	GAGNNNNNCTC	4 cut(s)	284, 316, 515, 547
BpuEI	CTTGAG	2 cut(s)	311, 1042
BsaJI	CCNNGG	1 cut(s)	834
BsaXI	ACNNNNNCTCC	2 cut(s)	950, 980
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 877, 955, 1026
Bse118I	RCCGGY	1 cut(s)	1026
Bse1I	ACTGG	1 cut(s)	811
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	834
BseGI	GGATG	2 cut(s)	200, 979
BseLI	CCNNNNNNNGG	4 cut(s)	107, 877, 955, 1026
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	811
BseXI	GCAGC	2 cut(s)	98, 941
BsgI	GTGCAG	1 cut(s)	1020
BshFI	GGCC	1 cut(s)	833
BsiHKAI	GWGCWC	2 cut(s)	261, 769
BsiSI	CCGG	1 cut(s)	1027
BslFI	GGGAC	1 cut(s)	1002
BslI	CCNNNNNNNGG	4 cut(s)	107, 877, 955, 1026
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	1002
BsnI	GGCC	1 cut(s)	833
Bsp1286I	GDGCHC	2 cut(s)	261, 769
Bsp143I	GATC	4 cut(s)	25, 246, 274, 390
BspACI	CCGC	2 cut(s)	617, 814
BspANI	GGCC	1 cut(s)	833
BspCNI	CTCAG	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	1026
BsrI	ACTGG	1 cut(s)	811
BssAI	RCCGGY	1 cut(s)	1026
BssECI	CCNNGG	1 cut(s)	834
BssMI	GATC	4 cut(s)	25, 246, 274, 390
BssT1I	CCWWGG	1 cut(s)	834
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	787
Bst6I	CTCTTC	4 cut(s)	109, 337, 371, 474
BstC8I	GCNNGC	2 cut(s)	45, 751
BstDEI	CTNAG	4 cut(s)	177, 224, 513, 684
BstENI	CCTNNNNNAGG	1 cut(s)	875
BstF5I	GGATG	2 cut(s)	200, 979
BstKTI	GATC	4 cut(s)	28, 249, 277, 393
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	4 cut(s)	25, 246, 274, 390
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	753
BstSCI	CCNGG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	98, 941
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	833
BtsCI	GGATG	2 cut(s)	200, 979
BtsI	GCAGTG	1 cut(s)	1037
BtsIMutI	CAGTG	2 cut(s)	557, 1037
Cac8I	GCNNGC	2 cut(s)	45, 751
Cfr10I	RCCGGY	1 cut(s)	1026
Cfr13I	GGNCC	1 cut(s)	831
CviAII	CATG	5 cut(s)	136, 319, 650, 750, 802
DdeI	CTNAG	4 cut(s)	177, 224, 513, 684
DpnI	GATC	4 cut(s)	27, 248, 276, 392
DpnII	GATC	4 cut(s)	25, 246, 274, 390
DraI	TTTAAA	1 cut(s)	1065
Eam1104I	CTCTTC	4 cut(s)	109, 337, 371, 474
EarI	CTCTTC	4 cut(s)	109, 337, 371, 474
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	834
Eco24I	GRGCYC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	395, 581
EcoICRI	GAGCTC	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	875
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	834
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	834
FaeI	CATG	5 cut(s)	139, 322, 653, 753, 805
FaqI	GGGAC	1 cut(s)	1002
FatI	CATG	5 cut(s)	135, 318, 649, 749, 801
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	2 cut(s)	112, 930
FokI	GGATG	2 cut(s)	187, 986
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	112, 930
GluI	GCNGC	2 cut(s)	112, 930
HaeIII	GGCC	1 cut(s)	833
HapII	CCGG	1 cut(s)	1027
Hin1II	CATG	5 cut(s)	139, 322, 653, 753, 805
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HinfI	GANTC	6 cut(s)	53, 336, 413, 500, 581, 915
HpaII	CCGG	1 cut(s)	1027
Hpy166II	GTNNAC	3 cut(s)	408, 550, 570
Hpy188I	TCNGA	7 cut(s)	58, 327, 341, 358, 367, 375, 722
Hpy188III	TCNNGA	3 cut(s)	50, 825, 943
Hpy8I	GTNNAC	3 cut(s)	408, 550, 570
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	787
HpyCH4V	TGCA	6 cut(s)	43, 351, 749, 753, 1037, 1042
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
HpyF3I	CTNAG	4 cut(s)	177, 224, 513, 684
Hsp92II	CATG	5 cut(s)	139, 322, 653, 753, 805
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	4 cut(s)	25, 246, 274, 390
LmnI	GCTCC	5 cut(s)	256, 264, 434, 518, 856
Lsp1109I	GCAGC	2 cut(s)	98, 941
MaeIII	GTNAC	4 cut(s)	296, 483, 792, 1072
MalI	GATC	4 cut(s)	27, 248, 276, 392
MboI	GATC	4 cut(s)	25, 246, 274, 390
MboII	GAAGA	5 cut(s)	96, 354, 388, 491, 509
MfeI	CAATTG	1 cut(s)	215
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	261, 769
MluCI	AATT	5 cut(s)	215, 369, 723, 883, 952
MlyI	GAGTC	3 cut(s)	494, 575, 924
MmeI	TCCRAC	2 cut(s)	286, 412
MseI	TTAA	3 cut(s)	459, 818, 1064
MspA1I	CMGCKG	1 cut(s)	932
MspI	CCGG	1 cut(s)	1027
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	623
NdeII	GATC	4 cut(s)	25, 246, 274, 390
NlaIII	CATG	5 cut(s)	139, 322, 653, 753, 805
NmuCI	GTSAC	2 cut(s)	792, 1072
NspI	RCATGY	1 cut(s)	753
PaeI	GCATGC	1 cut(s)	753
PfeI	GAWTC	3 cut(s)	53, 336, 413
PflMI	CCANNNNNTGG	1 cut(s)	955
PkrI	GCNGC	2 cut(s)	113, 931
PleI	GAGTC	3 cut(s)	494, 575, 923
PpsI	GAGTC	3 cut(s)	494, 575, 923
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	831
PsuI	RGATCY	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	932
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	459, 818, 1064
SatI	GCNGC	2 cut(s)	112, 930
Sau3AI	GATC	4 cut(s)	25, 246, 274, 390
Sau96I	GGNCC	1 cut(s)	831
SchI	GAGTC	3 cut(s)	494, 575, 924
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	261, 769
SmlI	CTYRAG	2 cut(s)	290, 1021
SmoI	CTYRAG	2 cut(s)	290, 1021
SphI	GCATGC	1 cut(s)	753
Sse9I	AATT	5 cut(s)	215, 369, 723, 883, 952
SsiI	CCGC	2 cut(s)	617, 814
SspI	AATATT	1 cut(s)	576
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	1 cut(s)	787
TaqI	TCGA	8 cut(s)	51, 66, 249, 584, 735, 798, 844, 890
TasI	AATT	5 cut(s)	215, 369, 723, 883, 952
TfiI	GAWTC	3 cut(s)	53, 336, 413
Tru1I	TTAA	3 cut(s)	459, 818, 1064
Tru9I	TTAA	3 cut(s)	459, 818, 1064
TscAI	CASTG	2 cut(s)	564, 1044
TseFI	GTSAC	2 cut(s)	792, 1072
TseI	GCWGC	2 cut(s)	111, 929
Tsp45I	GTSAC	2 cut(s)	792, 1072
TspDTI	ATGAA	2 cut(s)	152, 638
TspRI	CASTG	2 cut(s)	564, 1044
Van91I	CCANNNNNTGG	1 cut(s)	955
XagI	CCTNNNNNAGG	1 cut(s)	875
XapI	RAATTY	4 cut(s)	369, 723, 883, 952
XceI	RCATGY	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.