Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0020959

Physical Location & Seq

Genomic Coordinates Reverse (-)

30248003 .. 30249322

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1207700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGTTGAATGTAAACCAATTACTTGCAAAATGCAAAACCCTCAACCATCTAAAGCAACTGCACGTCTTTATCATCACTCTTGGTTACGGCCAGAGTGAAATCTACGCCTTCAAGCTCGTCCGCTTCTGCCTTGTCACTCTCCCCAATGCCAACCTTCCCTATGCTCGCCTCATCTTCGACTGCCTCCACTACCCGAATGTATACCATTACGCTGCCATGATTGCTGGTTATGCCTCCCAGTCCCACCACCATTCTGTTTTTTTGTTGTACCGACGCATGTTTTGTCAGGGAAGCCCTCAACCCAACCATTTTATCTACCCCCACATCTTGAAATCTAGTCCAGAGGTTTTTAAGTCTCACGGGACTGAACTGGTGCATACCCACATCATGAAATCGGGTTTTGGTCAATACCCTGTTGTGCAAACGGCTCTTCTTGATTCCTACTCCAGGTTCCGCTCGGATGTTGGCTCAGCAAGGCGGGTGTTTGAAGAAATGTCTGAGAAGAATGTCGTGACCTGGACGGCTATGATTTCTGGGCACACTAGAGTTGGGGACATTGGTGGTGCTCTGTTGTTGTTCGAGAAAATGCCGGAGAGAGATGTCCCTTCTTGGAATGCTGTTATTGCAGGTTGCACGCAGAACGGCCAGTTCTCGGAGGCAATTTCTCTGTTCAAAACAATGGTTCATATTGCACATGGGGAGAAACATCGAGAAAATTGGCCGAATCAGGTTACTGCTGTATGTGTTCTTTCGGCTTGTAGTCACACTGGCATGCTGCAGCTTGGTAAATGGCTGCACAACTATATTTACAAAAATGCGCTTGGTCCAGATTCGTTTGTTTCCAATTCTTTAGTAGATATGTATGGGAAATGTGGGAGCTTGAAAGTGGCAAGAAGGGTTTTCGACAGGACCTCGCAAAAAAGCTTGACCTCTTGGAATTCCATGATCAACTCTTATGCTCTGCACGGTGAAAGTGACAATGCAATTGGTGTGTTTGAGGACATGATACAGTGTGGGGCTGATGTAAGACCAGATGAGGTCACTTTTGTAGGCTTATTCAATGCTTGCACGCATGAAGGGTTGGTAGAGAAAGGTATTTCTTATTTTGATTTGATGACTCAGGGTTATGGGATTGAGCCTCAGATAGAACACTATGGATGCTTGATAGACCTTCTTGGTCGAGCAGGTCGATTTGAGGAAGCCATGGAAGCTGTGAGGGGAATGAAAATTGAACCCGATGAGGTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

417

Amino Acids

46.81

Weight (kDa)

6.87

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	168 - 201	5.9e-06	PPR repeat family
PPR	PF01535	171 - 200	3.1e-06	PPR repeat
PPR	PF01535	203 - 228	3.7e-06	PPR repeat
PPR_2	PF13041	310 - 357	8.9e-08	PPR repeat family
PPR	PF01535	311 - 339	4.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33350 AT1G33350
malus_domestica	MD11G1207700.v1.1
prunus_persica	Prupe.8G000500_v2.0.a1
pyrus_communis	pycom11g18090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	617, 1175
AccBSI	CCGCTC	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	3 cut(s)	121, 454, 478
AcoI	YGGCCR	3 cut(s)	88, 643, 719
AcsI	RAATTY	1 cut(s)	937
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	447, 652
AgsI	TTSAA	8 cut(s)	7, 112, 331, 488, 673, 883, 1060, 1232
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	446, 515
AluBI	AGCT	5 cut(s)	115, 781, 879, 924, 1211
AluI	AGCT	5 cut(s)	115, 781, 879, 924, 1211
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	1 cut(s)	360
AoxI	GGCC	3 cut(s)	88, 643, 719
ApeKI	GCWGC	4 cut(s)	212, 775, 778, 793
ApoI	RAATTY	1 cut(s)	937
ArsI	GACNNNNNNTTYG	2 cut(s)	264, 296
AspLEI	GCGC	1 cut(s)	820
AspS9I	GGNCC	2 cut(s)	824, 909
AsuHPI	GGTGA	1 cut(s)	980
AvaII	GGWCC	2 cut(s)	824, 909
BaeGI	GKGCMC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	4 cut(s)	199, 762, 780, 790
BccI	CCATC	1 cut(s)	54
BceAI	ACGGC	4 cut(s)	103, 441, 537, 658
BciT130I	CCWGG	2 cut(s)	448, 517
BclI	TGATCA	1 cut(s)	945
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	2 cut(s)	336, 543
BfmI	CTRYAG	1 cut(s)	776
BfuAI	ACCTGC	2 cut(s)	617, 1175
BisI	GCNGC	4 cut(s)	213, 776, 779, 794
BlpI	GCTNAGC	1 cut(s)	469
BlsI	GCNGC	4 cut(s)	214, 777, 780, 795
Bme1390I	CCNGG	2 cut(s)	448, 517
Bme18I	GGWCC	2 cut(s)	824, 909
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	824, 909
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	2 cut(s)	448, 517
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	1148
BmuI	ACTGGG	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	430
Bpu1102I	GCTNAGC	1 cut(s)	469
BsaJI	CCNNGG	1 cut(s)	1203
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 652
Bse1I	ACTGG	4 cut(s)	238, 375, 646, 772
BseBI	CCWGG	2 cut(s)	448, 517
BseDI	CCNNGG	1 cut(s)	1203
BseGI	GGATG	2 cut(s)	466, 1163
BseLI	CCNNNNNNNGG	2 cut(s)	447, 652
BseMII	CTCAG	4 cut(s)	483, 489, 1133, 1154
BseNI	ACTGG	4 cut(s)	238, 375, 646, 772
BseSI	GKGCMC	1 cut(s)	540
BseXI	GCAGC	4 cut(s)	199, 762, 780, 790
BsgI	GTGCAG	3 cut(s)	44, 779, 947
BshFI	GGCC	3 cut(s)	90, 645, 721
BsiHKAI	GWGCWC	1 cut(s)	568
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	4 cut(s)	226, 376, 566, 587
BslI	CCNNNNNNNGG	2 cut(s)	447, 652
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	4 cut(s)	226, 376, 566, 587
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	3 cut(s)	90, 645, 721
Bsp1286I	GDGCHC	2 cut(s)	540, 568
Bsp143I	GATC	1 cut(s)	945
Bsp1720I	GCTNAGC	1 cut(s)	469
Bsp19I	CCATGG	1 cut(s)	1203
BspACI	CCGC	3 cut(s)	121, 454, 478
BspANI	GGCC	3 cut(s)	90, 645, 721
BspCNI	CTCAG	4 cut(s)	482, 490, 1132, 1153
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	452
BspMAI	CTGCAG	1 cut(s)	780
BspMI	ACCTGC	2 cut(s)	617, 1175
BspQI	GCTCTTC	1 cut(s)	435
BsrBI	CCGCTC	1 cut(s)	456
BsrI	ACTGG	4 cut(s)	238, 375, 646, 772
BssECI	CCNNGG	1 cut(s)	1203
BssMI	GATC	1 cut(s)	945
BssNAI	GTATAC	1 cut(s)	202
BssT1I	CCWWGG	1 cut(s)	1203
Bst1107I	GTATAC	1 cut(s)	202
Bst2UI	CCWGG	2 cut(s)	448, 517
Bst4CI	ACNGT	2 cut(s)	968, 1011
Bst6I	CTCTTC	1 cut(s)	435
BstC8I	GCNNGC	5 cut(s)	166, 635, 773, 1066, 1070
BstDEI	CTNAG	4 cut(s)	469, 498, 1119, 1140
BstDSI	CCRYGG	1 cut(s)	1203
BstENI	CCTNNNNNAGG	1 cut(s)	445
BstF5I	GGATG	2 cut(s)	466, 1163
BstHHI	GCGC	1 cut(s)	820
BstKTI	GATC	1 cut(s)	948
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	1 cut(s)	945
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 230, 623, 1208
BstNI	CCWGG	2 cut(s)	448, 517
BstNSI	RCATGY	2 cut(s)	280, 775
BstSCI	CCNGG	2 cut(s)	446, 515
BstSFI	CTRYAG	1 cut(s)	776
BstSLI	GKGCMC	1 cut(s)	540
BstV1I	GCAGC	4 cut(s)	199, 762, 780, 790
BstZ17I	GTATAC	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	90, 645, 721
BtgI	CCRYGG	1 cut(s)	1203
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	466, 1163
BtsIMutI	CAGTG	2 cut(s)	765, 1016
BveI	ACCTGC	2 cut(s)	617, 1175
Cac8I	GCNNGC	5 cut(s)	166, 635, 773, 1066, 1070
CciI	TCATGA	1 cut(s)	387
CfoI	GCGC	1 cut(s)	820
Cfr13I	GGNCC	2 cut(s)	824, 909
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	268
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	4 cut(s)	469, 498, 1119, 1140
DpnI	GATC	1 cut(s)	947
DpnII	GATC	1 cut(s)	945
EaeI	YGGCCR	3 cut(s)	88, 643, 719
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	1203
Eco47I	GGWCC	2 cut(s)	824, 909
EcoNI	CCTNNNNNAGG	1 cut(s)	445
EcoO109I	RGGNCCY	1 cut(s)	909
EcoRI	GAATTC	1 cut(s)	937
EcoRII	CCWGG	2 cut(s)	446, 515
EcoT14I	CCWWGG	1 cut(s)	1203
ErhI	CCWWGG	1 cut(s)	1203
FaqI	GGGAC	4 cut(s)	226, 376, 566, 587
FauI	CCCGC	1 cut(s)	471
FbaI	TGATCA	1 cut(s)	945
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	4 cut(s)	213, 776, 779, 794
FokI	GGATG	2 cut(s)	473, 1170
Fsp4HI	GCNGC	4 cut(s)	213, 776, 779, 794
FspBI	CTAG	2 cut(s)	336, 543
GlaI	GCGC	1 cut(s)	819
GluI	GCNGC	4 cut(s)	213, 776, 779, 794
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	3 cut(s)	90, 645, 721
HapII	CCGG	1 cut(s)	590
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	1 cut(s)	820
Hin6I	GCGC	1 cut(s)	818
HinP1I	GCGC	1 cut(s)	818
HindIII	AAGCTT	1 cut(s)	922
HinfI	GANTC	4 cut(s)	437, 724, 830, 1117
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	1 cut(s)	980
Hpy166II	GTNNAC	2 cut(s)	13, 202
Hpy188I	TCNGA	4 cut(s)	460, 499, 655, 1143
Hpy188III	TCNNGA	8 cut(s)	328, 341, 388, 434, 511, 580, 710, 827
Hpy8I	GTNNAC	2 cut(s)	13, 202
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	6 cut(s)	118, 164, 615, 888, 1070, 1181
HpyCH4III	ACNGT	2 cut(s)	968, 1011
HpyCH4IV	ACGT	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 230, 623, 1208
HpyF3I	CTNAG	4 cut(s)	469, 498, 1119, 1140
HpySE526I	ACGT	1 cut(s)	63
HspAI	GCGC	1 cut(s)	818
Ksp22I	TGATCA	1 cut(s)	945
Kzo9I	GATC	1 cut(s)	945
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	876
Lsp1109I	GCAGC	4 cut(s)	199, 762, 780, 790
LweI	GCATC	1 cut(s)	1148
MaeI	CTAG	2 cut(s)	336, 543
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	7 cut(s)	83, 133, 511, 730, 761, 974, 1039
MalI	GATC	1 cut(s)	947
MbiI	CCGCTC	1 cut(s)	456
MboI	GATC	1 cut(s)	945
MboII	GAAGA	4 cut(s)	166, 422, 500, 514
MfeI	CAATTG	1 cut(s)	984
MhlI	GDGCHC	2 cut(s)	540, 568
MluCI	AATT	7 cut(s)	17, 660, 715, 844, 937, 984, 1227
MlyI	GAGTC	1 cut(s)	1111
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	770
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	2 cut(s)	448, 517
MunI	CAATTG	1 cut(s)	984
Mva1269I	GAATGC	1 cut(s)	619
MvaI	CCWGG	2 cut(s)	448, 517
MwoI	GCNNNNNNNGC	4 cut(s)	221, 230, 623, 1208
NcoI	CCATGG	1 cut(s)	1203
NdeII	GATC	1 cut(s)	945
NlaIV	GGNNCC	1 cut(s)	452
NmuCI	GTSAC	5 cut(s)	133, 511, 761, 974, 1039
NspI	RCATGY	2 cut(s)	280, 775
PaeI	GCATGC	1 cut(s)	775
PagI	TCATGA	1 cut(s)	387
PciSI	GCTCTTC	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	1 cut(s)	1186
PctI	GAATGC	1 cut(s)	619
PfeI	GAWTC	3 cut(s)	437, 724, 830
PkrI	GCNGC	4 cut(s)	214, 777, 780, 795
PleI	GAGTC	1 cut(s)	1111
PpsI	GAGTC	1 cut(s)	1111
PpuMI	RGGWCCY	1 cut(s)	909
Psp5II	RGGWCCY	1 cut(s)	909
Psp6I	CCWGG	2 cut(s)	446, 515
PspGI	CCWGG	2 cut(s)	446, 515
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	2 cut(s)	824, 909
PspPPI	RGGWCCY	1 cut(s)	909
PstI	CTGCAG	1 cut(s)	780
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	770
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	4 cut(s)	213, 776, 779, 794
Sau3AI	GATC	1 cut(s)	945
Sau96I	GGNCC	2 cut(s)	824, 909
SchI	GAGTC	1 cut(s)	1111
ScrFI	CCNGG	2 cut(s)	448, 517
SduI	GDGCHC	2 cut(s)	540, 568
SfaNI	GCATC	1 cut(s)	1148
SfcI	CTRYAG	1 cut(s)	776
SinI	GGWCC	2 cut(s)	824, 909
SmiMI	CAYNNNNRTG	1 cut(s)	770
SphI	GCATGC	1 cut(s)	775
Sse9I	AATT	7 cut(s)	17, 660, 715, 844, 937, 984, 1227
SsiI	CCGC	3 cut(s)	121, 454, 478
SspMI	CTAG	2 cut(s)	336, 543
StyD4I	CCNGG	2 cut(s)	446, 515
StyI	CCWWGG	1 cut(s)	1203
TaaI	ACNGT	2 cut(s)	968, 1011
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	6 cut(s)	177, 579, 709, 903, 1180, 1189
TasI	AATT	7 cut(s)	17, 660, 715, 844, 937, 984, 1227
TfiI	GAWTC	3 cut(s)	437, 724, 830
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	2 cut(s)	772, 1016
TseFI	GTSAC	5 cut(s)	133, 511, 761, 974, 1039
TseI	GCWGC	4 cut(s)	212, 775, 778, 793
Tsp45I	GTSAC	5 cut(s)	133, 511, 761, 974, 1039
TspDTI	ATGAA	4 cut(s)	404, 674, 1089, 1238
TspRI	CASTG	2 cut(s)	772, 1016
VpaK11BI	GGWCC	2 cut(s)	824, 909
XagI	CCTNNNNNAGG	1 cut(s)	445
XapI	RAATTY	1 cut(s)	937
XceI	RCATGY	2 cut(s)	280, 775
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	2 cut(s)	336, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.