MD11G1250900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
36297781 .. 36299552
1772 bp
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UTR
Exon/CDS
Intron
MD11G1250900.v1.1.491

Sequence Viewer

Length: 186 bp
ATGGCCTCACATCAAACCCCCTCATTTCACACAATCGACCACCTACTCACAACCTCTCATCCAGAATTTGTGCGATTCCTTAGGCAGCTCACAACCTCAACTCTCTGTGACGGCCCTCATCATCCCTCATCCATGACAACTCATAAATCTTCGTCCTCCGTCCTCCCTCCTTGGATTACATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.84

Weight (kDa)

7.06

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028920)

Species Orthologous Gene IDs
malus_domestica MD11G1250900.v1.1
pyrus_communis pycom11g20320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 65
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
AoxI GGCC 2 cut(s) 3, 112
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 80
BbvI GCAGC 1 cut(s) 97
BceAI ACGGC 1 cut(s) 127
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 170
Bse21I CCTNAGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 3 cut(s) 58, 121, 128
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 2 cut(s) 5, 114
BsnI GGCC 2 cut(s) 5, 114
BspANI GGCC 2 cut(s) 5, 114
BssECI CCNNGG 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 3 cut(s) 58, 121, 128
BstV1I GCAGC 1 cut(s) 97
Bsu36I CCTNAGG 1 cut(s) 80
BsuRI GGCC 2 cut(s) 5, 114
BtsCI GGATG 3 cut(s) 58, 121, 128
Cfr13I GGNCC 1 cut(s) 113
CviAII CATG 1 cut(s) 133
CviJI RGCY 3 cut(s) 5, 88, 114
CviKI_1 RGCY 3 cut(s) 5, 88, 114
DdeI CTNAG 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 170
Eco81I CCTNAGG 1 cut(s) 80
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 1 cut(s) 136
FaiI YATR 2 cut(s) 134, 144
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 3 cut(s) 45, 108, 115
Fsp4HI GCNGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 86
HaeIII GGCC 2 cut(s) 5, 114
Hin1II CATG 1 cut(s) 136
HinfI GANTC 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 1 cut(s) 136
LpnPI CCDG 1 cut(s) 75
Lsp1109I GCAGC 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 107
MboII GAAGA 1 cut(s) 141
MluCI AATT 1 cut(s) 65
MnlI CCTC 9 cut(s) 16, 31, 64, 106, 126, 136, 166, 173, 177
NlaIII CATG 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 113
SatI GCNGC 1 cut(s) 86
Sau96I GGNCC 1 cut(s) 113
SetI ASST 4 cut(s) 45, 56, 90, 98
SgeI CNNG 2 cut(s) 74, 145
Sse9I AATT 1 cut(s) 65
StyI CCWWGG 1 cut(s) 170
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 65
TfiI GAWTC 1 cut(s) 75
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 107
TspGWI ACGGA 1 cut(s) 148
XapI RAATTY 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.