Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0022437

Physical Location & Seq

Genomic Coordinates Reverse (-)

39104684 .. 39105483

Gene Structure 800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1274400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTGGAAGAACATTATTTTTCTCTCGATTCTTTATGACATATTTTGTGTAATGTTTAGCAGGGTATTGGCTGATGATCATATTCTTTGGGGGTGCGAGGCAATTTTGAGGTTGCACGGGCAAGATCTTGTCAAATATCCTGCTCTGATATGGTGTTGGAGATTATTTATGCTCAAATTGTGGAATCACGGTCTCCTTGACGCACGGACCATGAACAACTGTAACATAATTCTTGAACAATGTCAAAGCCCAGCGTCGGAACCCCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031490 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0071514 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VEFS-Box

Protein Analysis

91

Amino Acids

10.63

Weight (kDa)

6.23

Isoelectric Point (pI)

70.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VEFS-Box	PF09733	17 - 71	5.2e-15	VEFS-Box of polycomb protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0022437)

Species	Orthologous Gene IDs
malus_domestica	MD11G1274400.v1.1
rosa_multiflora	Rmu_sc0003221.1_g000059
rosa_samantha	Rh5AG202000 Rh5CG220500

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	207
BclI	TGATCA	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	197
BglII	AGATCT	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseYI	CCCAGC	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	1 cut(s)	197
Bso31I	GGTCTC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	76, 124
BspLI	GGNNCC	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	197
BssMI	GATC	2 cut(s)	76, 124
Bst4CI	ACNGT	2 cut(s)	191, 221
BstKTI	GATC	2 cut(s)	79, 127
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	2 cut(s)	76, 124
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	2 cut(s)	209, 243
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	2 cut(s)	71, 249
CviKI_1	RGCY	2 cut(s)	71, 249
DpnI	GATC	2 cut(s)	78, 126
DpnII	GATC	2 cut(s)	76, 124
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	207
FaeI	CATG	1 cut(s)	214
FaiI	YATR	7 cut(s)	36, 41, 81, 151, 170, 212, 227
FatI	CATG	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	76
GsaI	CCCAGC	1 cut(s)	254
HgaI	GACGC	2 cut(s)	209, 243
Hin1II	CATG	1 cut(s)	214
HinfI	GANTC	2 cut(s)	28, 184
Hpy188I	TCNGA	2 cut(s)	147, 259
Hpy188III	TCNNGA	2 cut(s)	25, 233
Hpy99I	CGWCG	1 cut(s)	259
HpyCH4III	ACNGT	2 cut(s)	191, 221
HpyCH4V	TGCA	1 cut(s)	115
Hsp92II	CATG	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	76, 124
LpnPI	CCDG	3 cut(s)	46, 153, 264
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	2 cut(s)	78, 126
MboI	GATC	2 cut(s)	76, 124
MboII	GAAGA	1 cut(s)	19
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	3 cut(s)	102, 176, 228
MmeI	TCCRAC	2 cut(s)	137, 237
MnlI	CCTC	2 cut(s)	91, 102
NdeII	GATC	2 cut(s)	76, 124
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	28, 184
PspFI	CCCAGC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	124
Sau3AI	GATC	2 cut(s)	76, 124
Sau96I	GGNCC	1 cut(s)	207
SetI	ASST	1 cut(s)	113
SinI	GGWCC	1 cut(s)	207
Sse9I	AATT	3 cut(s)	102, 176, 228
TaaI	ACNGT	2 cut(s)	191, 221
TaqI	TCGA	1 cut(s)	26
TasI	AATT	3 cut(s)	102, 176, 228
TfiI	GAWTC	2 cut(s)	28, 184
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.